Genomic Location: chr4:6897726...6923016
NR annotation: XP_028396029.1, bromodomain adjacent to zinc finger domain protein 1A-like [Dendronephthya gigantea]
Species Muricea muricata · all data for this species · gene families
| CDS |
| BRAKERXEIT00000046428 |
| Transcript |
| BRAKERXEIT00000046428 |
| Protein |
| BRAKERXEIP00000046428.1 |
| UniProt accession | Description |
|---|---|
| Q9NRL2 | Bromodomain adjacent to zinc finger domain protein 1A OS=Homo sapiens OX=9606 GN=BAZ1A PE=1 SV=2 |
| O88379 | Bromodomain adjacent to zinc finger domain protein 1A OS=Mus musculus OX=10090 GN=Baz1a PE=1 SV=3 |
| Q8UVR5 | Bromodomain adjacent to zinc finger domain protein 1A (Fragment) OS=Xenopus laevis OX=8355 GN=baz1a PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004993 (this species only) · gene tree & orthology |
| Ubiquitin family | E3|E3 activity RING|PHD · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00439 all species → | Bromodomain | Bromodomain | Domain | Interproscan |
| PF15613 all species → | WSD | Williams-Beuren syndrome DDT (WSD), D-TOX E motif | Family | Interproscan |
| PF00628 all species → | PHD | PHD-finger | Domain | Interproscan |
| PF02791 all species → | DDT | DDT domain | Family | Interproscan |
| PF15612 all species → | WHIM1 | WSTF, HB1, Itc1p, MBD9 motif 1 | Motif | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR019786 all species → | Conserved_site | Zinc finger, PHD-type, conserved site | Interproscan |
| IPR018501 all species → | Domain | DDT domain | Interproscan |
| IPR036427 all species → | Homologous_superfamily | Bromodomain-like superfamily | Interproscan |
| IPR001965 all species → | Domain | Zinc finger, PHD-type | Interproscan |
| IPR001487 all species → | Domain | Bromodomain | Interproscan |
| IPR013083 all species → | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| IPR028941 all species → | Domain | WHIM2 domain | Interproscan |
| IPR019787 all species → | Domain | Zinc finger, PHD-finger | Interproscan |
| IPR047171 all species → | Family | Bromodomain adjacent to zinc finger domain protein 1A | Interproscan |
| IPR011011 all species → | Homologous_superfamily | Zinc finger, FYVE/PHD-type | Interproscan |
| IPR018359 all species → | Conserved_site | Bromodomain, conserved site | Interproscan |
| IPR028942 all species → | Domain | WHIM1 domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46510 all species → | BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 1A | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0000228 all species → | Cellular Component | nuclear chromosome | Interproscan |
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0006338 all species → | Biological Process | chromatin remodeling | Interproscan |
| GO:0006355 all species → | Biological Process | regulation of DNA-templated transcription | Interproscan |
| GO:0008623 all species → | Cellular Component | CHRAC | Interproscan |
| GO:0031445 all species → | Biological Process | regulation of heterochromatin formation | Interproscan |
| GO:0045740 all species → | Biological Process | positive regulation of DNA replication | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K11655 | BAZ1A, ACF1; bromodomain adjacent to zinc finger domain protein 1A | - | Chromosome and associated proteins | ko03036 | deepkoala |
Genes whose expression across the transcriptome samples of Muricea muricata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Muricea muricata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
