Detailed information of BRAKERXEIP00000046791.1 in Muricea muricata

Genomic Location: chr4:4753321...4759918
NR annotation: CAB3983709.1, Beclin 1-associated autophagy-related key regulator [Paramuricea clavata]
Species Muricea muricata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006309 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF10186
all species →
ATG14Vacuolar sorting 38 and autophagy-related subunit 14FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR018791
all species →
FamilyUV radiation resistance protein/autophagy-related protein 14Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13664
all species →
BECLIN 1-ASSOCIATED AUTOPHAGY-RELATED KEY REGULATORInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000045
all species →
Biological Processautophagosome assemblyInterproscan
GO:0000423
all species →
Biological ProcessmitophagyInterproscan
GO:0005776
all species →
Cellular ComponentautophagosomeInterproscan
GO:0009267
all species →
Biological Processcellular response to starvationInterproscan
GO:0035032
all species →
Cellular Componentphosphatidylinositol 3-kinase complex, class IIIInterproscan
GO:0043552
all species →
Biological Processobsolete positive regulation of phosphatidylinositol 3-kinase activityInterproscan
GO:0097629
all species →
Cellular Componentextrinsic component of omegasome membraneInterproscan
GO:0097632
all species →
Cellular Componentextrinsic component of phagophore assembly site membraneInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K17889ATG14L, ATG14; beclin 1-associated autophagy-related key regulator-Mitochondrial biogenesisko03029deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Muricea muricata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Muricea muricata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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