Gene detail

Detailed information of BRAKERXEIP00000047883.1 in Muricea muricata

Genomic Location: not available for this species
NR annotation: XP_046850263.1, tetratricopeptide repeat protein 14-like [Xenia sp. Carnegie-2017]
Species Muricea muricata · all data for this species · gene families

Sequence

CDS

BRAKERXEIT00000047883

ATGATATCTATAAGTGAGGATGAATTTCATAGATATTATTGGCCCAAATTGGAGGCTGCTATTAACttgattttgcaacaaaatCCAGGGGAATATATTCCTATATCGTATGAGGAGACCTACAGTGCTGTTTACAAGTGTGTTTGTCAACAACATTCTGAAAAGCTCTATGAGAATTTGATgatacttattaataatattctTAGCAGGATTAAAAACGAATTAGAGAATCAACCTGTCAATATGTATCTCCAGAGATTTGAGCATATCATGTCTCAATATTTGCAAAGCGTGGAGGGAATTGCAGCAATATTTAATTATATGAACCGATTTTATGTAAAGCCTAAGAAAAACTGTGAGCTCAAAGCAGAACTGTTAACATTATTTTCATCATTGATTGCAGACAATGAGAGATTGTTTGATATTCTCAACCATTGTGCAGCTCAACCACTTTCATCCAATCCAGAGGTATTAATGTCAATTGTGCGAGGACTGTACATGCTTAGACCAGaaTTTGCCGAGAAGAATGTCGACCTGTTTTCTCGGTTTATACCTAATCTTGTTGGCCATTCTAATTCACTGGATGAAGAAATTATTGAAACAGAATTATTACAACAGAATTTAAGAAATCAGGAAGGATTTCTGAGGGgagaaaatttacttaagagagATCTGGATGCAGCAGAAATCTCAGTGGAAGGAGAAAGTGAGGATATCACTTGGAGAATAGATAGGTTTGTGCAATCATTGAGTGCTCTTGGCAGGGATTTAGGAGAGGCAACAGCACAAGAACAAGGATGTGAACCTGGTAGTGATTTTGCATTCCTTGATTTAGAAAATCAAACAAGTTATGCTACACATTACTACAGACAAAAACTTCAGTCATACACAGGTAGTCATGATATGAATGAAGACCCACAATTCAGGAACAGAGTAAAGAATTTTACGACTTCAAAAGCAGACTTGCTATTTAAACTGAAAGGAAAAGATAGATTACGAAGTGGAGTTGATTACAATATAGGTGAAGCACAAGAAGctTATAGTATATTTGCTACAAAAGTTCCACCACTTGAAGATGGAATGCACTTATCCAATCTTGCACGTAGAGCTCACATTTTTGAATTATTGAATGTGGATGACATTGTCCTTGGAAAAGTTGTTGGGAAGCGTCCATTTGGCGTCTTTGTAAGAATTCTCTCTTTGGTTCATGGGCGGAATTTGGATTTTAACAATATTGATATTCAGGCATTGTGTCCAAAGTCAGAATTAGAGAAAGATCACAAGTCACGTGAACATTTAGATCCAATAGATGATTTTGATGTTGATGACATTGTCCAAGGTGTGATTTGTTCCATATCAAACGATGAAGAAAGGATTGCAATTTCTTTTCGCTCTGCAAACCTGCCATCGGAATATGGCAACATTGAACTGGGTATCATTGAAGACGTCGAAGAACACAAGTTAAGACCGAAATCGTCCGATGAAAGCTTGGATTATAACGATTACTTGAGAAGAGATCCCGGATTCTGCAATCCAACCAATGTGCAGACCTTGGTTGATGTTTTAGGAATCGACTGTAAACCTCCAAGTTCGTTACTGAGATCTTGTCAAAGATGGATAATCAGTGATAAAGATACCTTGAGGAAACAACAGTCTAAGAAATGGTCAATGGACACGACGGCCATCGGTGTGGATAGCTTCAAGAGCGGTGATCATGAGAAAGCTCTGAAATATTTCAATCATGCTTTAAACATTTATGAAGAAAATTCCGAAGCCTTGGTTGCTCGTGGCGCATTGTATGCAAACCAAAACAAATTCGAAAAGGCCATCGTTGATTTCAAGCAAGCTTTGAAACTGCATCCAAAACATCACAATGCAAGCAAGTACTTGAAAGAAACATTGTATGAGAAGGCACTAAGgttaaaaaatgttggaaacatTAGAGATGCTATAAATATATTTGAACAAGTGTTAGAGCTGGATCCTCAAAGTATTACAAGCCGGGGGCATTTGGAAGAACTGAAAGCTTTATTAGCTGCTAAGTTGGTGGAAGATGAGAGTAAAGCTCGGAAGGCTGCAAGTGTGCTGCACGAAAATCGAAAAAAGTTTGAACATGTGAGAAAACTGATCAAGTCAGATCCGGATGTCGTGAAAAGTGCTCGAAAGAAGAAAAGaaaaaagaagaaagggaagaaaagcaagaaacgtAGACGTCGTAGTGAAAGCGAGACCACAAGTACTGCTAGTGAAGGAGAAGGGAATGACAGGAAAGGTGATGAATGGATTGAAAAGGATCCTAAGGGACATTCACCGGGAACATTGAAACACAGTTTAATGGAGAGTAAAAGCAGCGCAATGACAGGAGCCACATCCAGTGATACTCGAGGGTCATTTGTAGCAAGTGAACGTAAGTTTTCTGAAACCGGGGAAGGTAGAATGGAAGATCGAAATGTGAGGGGGAAAGATTTGGAAAGGAACGTGCAAGGATTTTTAGGAAATGTTGGAGAAAGGCGAGAATGTAAAGAAGAGGAGGAGGAagtaaaatataaagaaaagaaaGGCAGGTTTGGAAATGGTGATAGGGAAACTATCAAAAATATATCTGGCAAGAGTAAGCTCCATCGTACTTCTCATTCAAGAAGTAGAAGCGGTTCAGTTGAGAGGAAAGATGGGGCTACGATGAGTAGAAACCAAGGAGATTCAGGCACACGTAAGGAAAGTTGTAAGAAGCTGAAAGAAAGCGATTCTTATGGTGGAAAACATCGGGAAAATACGAACAGACGAGAACATGGAAGGAGAAATGTACGACATAATGCAAGAAGTAGCTCAGACGACAGCAGTCGCGAACGAACTACGAGGAACTTTGAGCGTGACGAGTCGACAATTGTCAGACGTAGGAGAAGTCAGAATGGCAGAGGACGGAGGAGTACAAGTAGAGATAGTAGAGGACGACGAGGTTCGCGTGATGATAGTAGTAGTGAAAGAGATCGGTCAAGAAGTAGAAGCATTGGTCTGAAATGTGATCGATCAAGACGGAGAACAACTAATAGAAGGGGAAGACGAAGTACAAGCAGAGATAATGAAGAACGGCGTACTACAAGACGCAGGAGTACAAGTTGTAGTAGTGATAGTCGGAGAAGTAGAAGTTGGGGAATTAAAGAAAGACGAAGTATAAGCATGGATAATAAAGAAAGGCGTAGTACAAGCAAGGATAATAAAGGACGGCGTAGTACAAGCAGGAATAATAAAGAACGGCGTAGTACAAGTGAGGGCAGAAGAAGGCAGAGAAGCAAAAGCTATAATGAAAGCTGA

Transcript

BRAKERXEIT00000047883

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q86Y37	CDK2-associated and cullin domain-containing protein 1 OS=Homo sapiens OX=9606 GN=CACUL1 PE=1 SV=1
Q8R0X2	CDK2-associated and cullin domain-containing protein 1 OS=Mus musculus OX=10090 GN=Cacul1 PE=2 SV=1
Q5XI53	CDK2-associated and cullin domain-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Cacul1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003838 (this species only)
Ubiquitin family	E3\|E3 adaptor Cullin RING\|Cullin · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00515 all species →	TPR_1	Tetratricopeptide repeat	Repeat	Interproscan
PF13181 all species →	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF00888 all species →	Cullin	Cullin family	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR042652 all species →	Family	CDK2-associated and cullin domain-containing protein 1	Interproscan
IPR003029 all species →	Domain	S1 domain	Interproscan
IPR001373 all species →	Domain	Cullin, N-terminal	Interproscan
IPR016159 all species →	Homologous_superfamily	Cullin repeat-like-containing domain superfamily	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46636 all species →	CDK2-ASSOCIATED AND CULLIN DOMAIN-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000082 all species →	Biological Process	G1/S transition of mitotic cell cycle	Interproscan
GO:0019901 all species →	Molecular Function	protein kinase binding	Interproscan
GO:0045860 all species →	Biological Process	positive regulation of protein kinase activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0031625 all species →	Molecular Function	ubiquitin protein ligase binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERXEIP00000047883.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.