Genomic Location: chr5:16023080...16025966
NR annotation: CAB3998234.1, Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [Paramuricea clavata]
Species Muricea muricata · all data for this species · gene families
| CDS |
| BRAKERXEIT00000048649 |
| Transcript |
| BRAKERXEIT00000048649 |
| Protein |
| BRAKERXEIP00000048649.1 |
| UniProt accession | Description |
|---|---|
| Q9YHT2 | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Gallus gallus OX=9031 GN=SDHB PE=1 SV=1 |
| Q3B8J8 | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Xenopus laevis OX=8355 GN=sdhb PE=2 SV=1 |
| B0BM36 | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Xenopus tropicalis OX=8364 GN=sdhb PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007003 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13085 all species → | Fer2_3 | 2Fe-2S iron-sulfur cluster binding domain | Domain | Interproscan |
| PF13534 all species → | Fer4_17 | 4Fe-4S dicluster domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR009051 all species → | Homologous_superfamily | Alpha-helical ferredoxin | Interproscan |
| IPR004489 all species → | Family | Succinate dehydrogenase/fumarate reductase iron-sulphur protein | Interproscan |
| IPR017900 all species → | Conserved_site | 4Fe-4S ferredoxin, iron-sulphur binding, conserved site | Interproscan |
| IPR050573 all species → | Family | Succinate Dehydrogenase/Fumarate Reductase Iron-Sulfur | Interproscan |
| IPR036010 all species → | Homologous_superfamily | 2Fe-2S ferredoxin-like superfamily | Interproscan |
| IPR001041 all species → | Domain | 2Fe-2S ferredoxin-type iron-sulfur binding domain | Interproscan |
| IPR025192 all species → | Domain | Succinate dehydogenase/fumarate reductase N-terminal | Interproscan |
| IPR017896 all species → | Domain | 4Fe-4S ferredoxin-type, iron-sulphur binding domain | Interproscan |
| IPR006058 all species → | Binding_site | 2Fe-2S ferredoxin, iron-sulphur binding site | Interproscan |
| IPR012675 all species → | Homologous_superfamily | Beta-grasp domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11921 all species → | SUCCINATE DEHYDROGENASE IRON-SULFUR PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0051536 all species → | Molecular Function | iron-sulfur cluster binding | Interproscan |
| GO:0006099 all species → | Biological Process | tricarboxylic acid cycle | Interproscan |
| GO:0016491 all species → | Molecular Function | oxidoreductase activity | Interproscan |
| GO:0009060 all species → | Biological Process | aerobic respiration | Interproscan |
| GO:0022904 all species → | Biological Process | respiratory electron transport chain | Interproscan |
| GO:0031966 all species → | Cellular Component | mitochondrial membrane | Interproscan |
| GO:0009055 all species → | Molecular Function | electron transfer activity | Interproscan |
| GO:0051537 all species → | Molecular Function | 2 iron, 2 sulfur cluster binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00235 | SDHB, SDH2; succinate dehydrogenase (ubiquinone) iron-sulfur subunit | EC:1.3.5.1 | Non-alcoholic fatty liver disease | ko04932 | deepkoala |
Genes whose expression across the transcriptome samples of Muricea muricata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Muricea muricata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
