Detailed information of BRAKERXEIP00000048685.1 in Muricea muricata

Genomic Location: chr5:3915231...3917905
NR annotation: CAB3982160.1, hexokinase HKDC1 [Paramuricea clavata]
Species Muricea muricata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P35557Hexokinase-4 OS=Homo sapiens OX=9606 GN=GCK PE=1 SV=1
P52792Hexokinase-4 OS=Mus musculus OX=10090 GN=Gck PE=1 SV=1
P17712Hexokinase-4 OS=Rattus norvegicus OX=10116 GN=Gck PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002477 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00349
all species →
Hexokinase_1HexokinaseDomainInterproscan
PF03727
all species →
Hexokinase_2HexokinaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR043129
all species →
Homologous_superfamilyATPase, nucleotide binding domainInterproscan
IPR022672
all species →
DomainHexokinase, N-terminalInterproscan
IPR001312
all species →
FamilyHexokinaseInterproscan
IPR022673
all species →
DomainHexokinase, C-terminalInterproscan
IPR019807
all species →
Binding_siteHexokinase, binding siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR19443
all species →
HEXOKINASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005524
all species →
Molecular FunctionATP bindingInterproscan
GO:0005975
all species →
Biological Processcarbohydrate metabolic processInterproscan
GO:0016773
all species →
Molecular Functionphosphotransferase activity, alcohol group as acceptorInterproscan
GO:0001678
all species →
Biological Processintracellular glucose homeostasisInterproscan
GO:0004340
all species →
Molecular Functionglucokinase activityInterproscan
GO:0004396
all species →
Molecular Functionhexokinase activityInterproscan
GO:0005536
all species →
Molecular FunctionD-glucose bindingInterproscan
GO:0005739
all species →
Cellular ComponentmitochondrionInterproscan
GO:0005829
all species →
Cellular ComponentcytosolInterproscan
GO:0006006
all species →
Biological Processglucose metabolic processInterproscan
GO:0006096
all species →
Biological Processglycolytic processInterproscan
GO:0008865
all species →
Molecular Functionfructokinase activityInterproscan
GO:0046835
all species →
Biological Processcarbohydrate phosphorylationInterproscan
GO:0051156
all species →
Biological Processglucose 6-phosphate metabolic processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K00844HK; hexokinaseEC:2.7.1.1
Glycolysis / Gluconeogenesisko00010deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Muricea muricata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Muricea muricata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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