Detailed information of BRAKERXEIP00000048743.1 in Muricea muricata

Genomic Location: chr5:6996860...7037329
NR annotation: CAB3976802.1, helicase with zinc finger domain 2-like [Paramuricea clavata]
Species Muricea muricata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q62824Exocyst complex component 4 OS=Rattus norvegicus OX=10116 GN=Exoc4 PE=1 SV=1
O35382Exocyst complex component 4 OS=Mus musculus OX=10090 GN=Exoc4 PE=1 SV=2
Q96A65Exocyst complex component 4 OS=Homo sapiens OX=9606 GN=EXOC4 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002963 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF20652
all species →
Sec8_CExocyst complex component Sec8 C-terminalRepeatInterproscan
PF13087
all species →
AAA_12AAA domainDomainInterproscan
PF00773
all species →
RNBRNB domainDomainInterproscan
PF13086
all species →
AAA_11AAA domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR048630
all species →
DomainExocyst complex component Sec8, middle helical bundleInterproscan
IPR041679
all species →
DomainDNA2/NAM7 helicase-like, C-terminalInterproscan
IPR027417
all species →
Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR047187
all species →
DomainUpf1-like, C-terminal helicase domainInterproscan
IPR001900
all species →
DomainRibonuclease II/RInterproscan
IPR000571
all species →
DomainZinc finger, CCCH-typeInterproscan
IPR041677
all species →
DomainDNA2/NAM7 helicase, helicase domainInterproscan
IPR039682
all species →
FamilyExocyst complex component Sec8/EXOC4Interproscan
IPR012340
all species →
Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14146
all species →
EXOCYST COMPLEX COMPONENT 4Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003723
all species →
Molecular FunctionRNA bindingInterproscan
GO:0004540
all species →
Molecular FunctionRNA nuclease activityInterproscan
GO:0046872
all species →
Molecular Functionmetal ion bindingInterproscan
GO:0004386
all species →
Molecular Functionhelicase activityInterproscan
GO:0000145
all species →
Cellular ComponentexocystInterproscan
GO:0006887
all species →
Biological ProcessexocytosisInterproscan
GO:0006893
all species →
Biological ProcessGolgi to plasma membrane transportInterproscan
GO:0007268
all species →
Biological Processchemical synaptic transmissionInterproscan
GO:0032584
all species →
Cellular Componentgrowth cone membraneInterproscan
GO:0045202
all species →
Cellular ComponentsynapseInterproscan
GO:0090522
all species →
Biological Processvesicle tethering involved in exocytosisInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K25165HELZ2; 3'-5' exoribonuclease HELZ2EC:3.1.13.1
EC:5.6.2.6
Messenger RNA biogenesisko03019deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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