Gene detail

Detailed information of BRAKERXEIP00000048779.1 in Muricea muricata

Genomic Location: :...
NR annotation: CAB3977470.1, SON isoform X1 [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERXEIT00000048779

ATGGCAAACAAAAGTGGAGAGTCAGAAAGGTCTTCATCGGAATTATCAGATAGCGATGGAGGAAAGGGCAAGTATAGAGATGCCTCTAAGCCTAAAAAACACAAAAAGTCAAAACATTCTAAGAAAAAATCTAAGAAAAAGTCAAGTAAAAGGAAAAGGCATAGGGACAGGTCAAGGTCAAAGTCTAAAGAGCATCATAAAGCCAAAAGATCGGACTCACCCAATGAAAAAGATAAAGCAGAATCCACATCTAAACCACAGGGTGATGAATCGATCAGTCAAGCAGGAGATGTGTCAGCTAATGTTTCAGCCAATCAGGATTTTGTTCTCGGTGCATTTTCCATCAAGCTTGAACCAAAGTCACCAAGTACTGTAATACAAAGTGAAGCTCCTTTATGGGAAAATGGGCCATATAAGGTTGAGCCGTCTGTTGATATAAAGTCTGAACCAGCGGGAAAGGAAAATCTTAAAGATAATGACAGTAATAACTTTGAAATATATGATCCTGGTTTATATATTGGTAATAtaaaagatgaaaatgatttaGAATGTActgtgaaagaaaataaaagtgGAAAAGATGTAGGCAAAAAATCAAAGTCAAGATCTAGTTCTCGAGAGTCGCTTgcttttttgaagaaaaataagcCTAGAGAAAAATCAAACTCTATAGAAAGGAAGTCAGAAGGAAGAAGGTCTAGGTCCAAAGAAAGAAGTCAACATTCAGAGAAAGAAAGTCAGATTCCAAAGACAGAAGGTCAAGGTCTAGAAAAAGAAGGTCAAAGTCTAGAGAAAGAAGGTCAAAGTCCAATGACATACGGTCAAGGTCCAGAGAAAGAAGGTCAAAGTCTAAAGACAGAAGGTCAAGGTCCAAAGAGGGAAAGTCAGGATCAAAAGAGAGAAAGATCACTAAAAGATCTAAAGAAAGGTCTAAAGAAAGGTCgaaagaaatatcaaaatctaGGAAGAAGTCAAAGACTAGATCGCGTTCTCCAAAAAAATCTAGGAGATCTAGTTCACACCAAAAATCTTCTCGAAGATCAAAATCCAAAGAGCATCGAAGACCAAGATCAATTGAAAGACACAGATTTGCTCCACGGTTCCAAAACTATGCAAGCCAGCAATCAAGGTCAAATGACAGAAGATATAGATCCAGGTCTAGGTCTACTGGCAGAAGACGTCTATCAAGATCTCGTGAGAGGGACAAACGGTCAAGATCTCATGAAAGGCGACGCCGTGCAAGGTCTAGATCAAATTACAGAGGTCGAGGCTGCTGCTGCATCTGTTCCAGTGAATTTGACAATTGCATTAGGTGCACCGACCACTTCAGTGACAACCACTACAGCCATTACAAAGCCAAGCAAGAGTATAGCTGACTTTACAGCTCTGTGTAAAAAATTATCAGAAGCCaaggaagaagaaaaaaatgaaataggaGAGAGTGAAGTTAATGGTGAAAATGTTACTGCAGTCTATCACCCATTCAGTGTCAAACCAGCAAAAGACATTGTGATACCTCCAGTTATTTTGCCGTTGTCAAAGCCAGCAGGGCCACCTCAACGATTGGAACAAGCATTTCCAGTGTCCAGTGGAAATCAGCATAAAACAAAAGAAAGTACAAATGATGCTGTTGTGGAAGGTGTTGACGGAAGTGTTGCTGCAGCTGAGAAAGTCTTTCAAACTGCTGCACAACAGGAGAAACTTGATGTGAGTAGTCTTATTGCCAAGCGTATGGAAGCGCAAAATCGTCTTCAAAGTAATCCAAATGATTATGAAGCAAGACTAATGTTGGAGGaaattcaaatgaaaatacAGAACTGGGCATCGGTAAATCTCAAACCAGGTCAATATACTGGAGAAAGTTTAGTTAACTCATTGGTACCCAAGGAAAATATCAATAGTGGTTATCAAGCATGGGCCAAAAAAGATATGTTTCACAATTTAGCCCCCATCAGAGGAGGTGTGGGTATGAAATTGTTGCAGAAGATGGGTTGGAAGCCTGGCCAAATCCTTGGTAAAAGAGGGGAGGGTAGTTATGAACCAATTGCATTAAATGTGAAAACTGACAGGAAAGGTTTGGTCTCATGTGCTGAGGCAGGTGTTAAGGGTAAAGGTGGAGGTAAAGGAGGTGGTAAGAACATCTTGGCTGCACAGGCTGTACAAGGCAAACATCCTGTCTCCGCATTGGCAGAATTGTGCACGAAGAGACGATGGAAGACGCCAACCTACAATGTTGTTCATGAAAGTGGTCCAGCTCACAAAAAAGATTTTCTTTACGAAGTGATTGTTAATGGCAATAGCTATCAACATAATATTGCAAGTAACAACAAGAAATTGGCTAAGGCTGAAGCTGCTTTTGCTGCACTCAAAGCACTTGGTGTGGTTCCAGCAGATGCTGCTATGACATTGTAA

Transcript

BRAKERXEIT00000048779

Protein

Uniprot

Uniprot term	Description
Q9QX47	Protein SON OS=Mus musculus OX=10090 GN=Son PE=1 SV=2
P18583	Protein SON OS=Homo sapiens OX=9606 GN=SON PE=1 SV=4
Q9VHB0	Protein Son OS=Drosophila melanogaster OX=7227 GN=Son PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00035	dsrm	Double-stranded RNA binding motif	Domain	Interproscan
PF01585	G-patch	G-patch domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032922	Family	Protein SON	Interproscan
IPR014720	Domain	Double-stranded RNA-binding domain	Interproscan
IPR000467	Domain	G-patch domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46528	PROTEIN SON	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0043484	Biological Process	regulation of RNA splicing	Interproscan
GO:0048024	Biological Process	regulation of mRNA splicing, via spliceosome	Interproscan
GO:0051726	Biological Process	regulation of cell cycle	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K23718	SON; protein SON	-	Spliceosome	ko03041	deepkoala