Genomic Location: chr6:15502359...15505243
NR annotation: CAB3983932.1, DNA-binding SATB1 [Paramuricea clavata]
Species Muricea muricata · all data for this species · gene families
| CDS |
| BRAKERXEIT00000048936 |
| Transcript |
| BRAKERXEIT00000048936 |
| Protein |
| BRAKERXEIP00000048936.1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0008411 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF16557 all species → | CUTL | CUT1-like DNA-binding domain of SATB | Domain | Interproscan |
| PF00046 all species → | Homeodomain | Homeodomain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001356 all species → | Domain | Homeobox domain | Interproscan |
| IPR032355 all species → | Domain | SATB, CUT1-like DNA-binding domain | Interproscan |
| IPR009057 all species → | Homologous_superfamily | Homeobox-like domain superfamily | Interproscan |
| IPR038216 all species → | Homologous_superfamily | SATB, CUTL domain superfamily | Interproscan |
| IPR039673 all species → | Family | DNA-binding protein SATB1/SATB2 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR15116 all species → | DNA-BINDING PROTEIN SATB FAMILY MEMBER | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0000978 all species → | Molecular Function | RNA polymerase II cis-regulatory region sequence-specific DNA binding | Interproscan |
| GO:0000981 all species → | Molecular Function | DNA-binding transcription factor activity, RNA polymerase II-specific | Interproscan |
| GO:0006338 all species → | Biological Process | chromatin remodeling | Interproscan |
| GO:0006357 all species → | Biological Process | regulation of transcription by RNA polymerase II | Interproscan |
BRAKERXEIP00000048936.1.
