Detailed information of BRAKERXEIP00000049016.1 in Muricea muricata

Genomic Location: chr6:455614...455982
NR annotation: QNH72567.1, toxin candidate TRINITY_DN25552_c1_g1_i1 [Pachycerianthus borealis]
Species Muricea muricata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P0CJ14Venom protein 302 OS=Lychas mucronatus OX=172552 PE=2 SV=1
Q61581Insulin-like growth factor-binding protein 7 OS=Mus musculus OX=10090 GN=Igfbp7 PE=1 SV=3
Q16270Insulin-like growth factor-binding protein 7 OS=Homo sapiens OX=9606 GN=IGFBP7 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000757 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00219
all species →		IGFBPInsulin-like growth factor binding proteinDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR009030
all species →		Homologous_superfamilyGrowth factor receptor cysteine-rich domain superfamilyInterproscan
IPR000867
all species →		DomainInsulin-like growth factor-binding protein, IGFBPInterproscan
IPR011390
all species →		FamilyInsulin-like growth factor binding protein-related protein (IGFBP-rP), MAC25Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14186
all species →		INSULIN-LIKE GROWTH FACTOR BINDING PROTEIN-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005576
all species →		Cellular Componentextracellular regionInterproscan
GO:0001558
all species →		Biological Processregulation of cell growthInterproscan
GO:0005520
all species →		Molecular Functioninsulin-like growth factor bindingInterproscan
GO:0005615
all species →		Cellular Componentextracellular spaceInterproscan
GO:0009966
all species →		Biological Processregulation of signal transductionInterproscan
GO:0062023
all species →		Cellular Componentcollagen-containing extracellular matrixInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for BRAKERXEIP00000049016.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Muricea muricata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Muricea muricata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix–
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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