Gene detail

Detailed information of BRAKERXEIP00000049084.1 in Muricea muricata

Genomic Location: not available for this species
NR annotation: XP_028409116.1, staphylococcal nuclease domain-containing protein 1-like [Dendronephthya gigantea]
Species abbreviation MMURI · all data for this species · gene families

Sequence

CDS

BRAKERXEIT00000049084

ATGGCTCAACCGGCTCCAAATTTACACCGAGGAATTGTTAAACAGGTCCTTTCTGGGGATAGTATCATTATAAGAGAACAACCAAGAGGTGGTCCTCCCCCAGAGAAAAATCTTGGCCTGTCTAATGTCACTGCACCAAAATTATGTCGACGACCAACTGCAGCTGTAGCAACCGATAGTCGAGACGAGcCGTGTGCCTGGGAGAGCAGAGAGTTCTTAAGGAAGCAATTGATTGGAAAAGAAGTCTTCTATTCAGTTGAATATAATGCACCTGGTTCTAATAAACATTATGGATGTGTATATCTCAAGAATGgtgATCAGCTGACAAGCATCACAGAACAGAGTGTTATGGAAGGATTACTGGAAGTAAAGCGAGGAGGAATTAAACCTAGCGACGACCAGAGCAAGCTCATTGATTTGGAAGAATCTGCAAAGGCTGCTGAGAAAGGAAAATGGGCCAAAGATGCAGGCGAGCGTGTGAGGAATATTACCTGGACCATCGAGAATCCAAAACATTTTGTTGATGCTAATGCAGGAAAGGAATTTGATGCTGTAATCGAACACGTACGCGATGGTTGTACAGTGAGAGCTTTCTTGTTGCCTGATTTTTATCATGTCACCGTTATGATGGCAGGAATTAAGACTCCGATGTTTAAACGGGATGGACCAAACGAACTACCAGAACCGTTTGCTGAAGAGGCAAGATTTTTCACGGAATCGAGGCTACTGCAAAGGGAAGTGAAAATACGGCTGGACGGTGTTTCAAATGCAAACTTTCTTGGTACTGTTATACATCCTGCTGGCAGTATATCGCAGTTGTTACTTCGCGAGGGATTCGCTCGCTGTGTCGACTGGAGTATGTCCGTATTACCATCAGGACATGATGTGTACAGGAGTGCGGAAAGGTTCGCAAAACAGATGAAGAAGAGAATCTGGAAAGACTACGAACCCAGTACGCCAAGTGTTGTCATTGATAATAAAGAATATGCTGGAAAGGTAATAGAAGTCATCAACGCAGACGCATTGGTTGTGAAGTCACCAGAtggaaaaaataagaaattattCCTGTCAAGTTTAAGACCACCAAGATTAGCAACCAGGGAAGACGGAACTCAGGACCAGTCTTCGGGAAACAGACGAACGCGGCCGCTTTATGACGTTCCATACATGTTCGAAGCTCGTGAATTTATGAGGAAAAAATTGATTGGAAAGAAAGTGAATGTTTGTGTTGATTACATCAAACCTCCAAGCGATGGATACCCTGAGAAGACTTGTGCCACTGTTACTATCGGAAACATTAACGTCGCTGAAGCATTAATCAGTAAAGGTCTAGCGACTGTCATACGTCACAGACAAGACGATGACCAGAGATCATCGCATTATGACGAACTCCTCAGTGCAGAAACAAGAGCAATGAAGAACGGCAAGGGAGTGCACAGTAAGAAAGAAGCTCCGACTCATCGCATCTCCGAAGTATCAGgcGATGCACCGAAGGCAAAACAATTCCTGCCTTTCCTTCAACGAGCTGGTCGTATTACTGGTATTGTAGAGTTCGTAGCAAGTGGCTCAAGACTTCGAGTTTATTTACCGAAGGAAACGTGTCTCATTACTCTGTTATTGGCCGGTATTGACTGTCCGCGCATGCAGTCGACTGGGAACCAGGGTCATGTGATCACTGGAGAACCTTACGGAGAAGAAGCTTATAATTATACCCGGGAACATTGTTTACAAAAAGATgTTGAGATTGAAGTGTCAGCTTGTGATCGAGCGGGTAATTTCATTGGCTGGTTATTTGTGGATGACGTCAACTTATCATTGTCTCTAGTCAAGGAAGCGCTTTCAAGTGTTCACTTCAGCGCAGAAAAAAGTCAATTTTACAGTCAGTTGGTGACGGCAGAAGAAAATGCTAAAGCATCAAAGTTAAAAATCTGGGCCAACTATGAGGAAACTAAAACTATCGAAGTCGTTGATGACACTTCGGAAAGACAATGCAAATATGAAAATGTTTTTATCACCGAGGCAGAAGGTCCTCAATGTTTCTGGGTTCAACATGCTGATAGTGCGAAAGATATCGAGCAAATGATGGAAAGACTGAGAACTACCCTAACTGCGAATCCACCTGTACCAGGCTCCTATACGCCACGCCGTGGGGAACTATGTGCTGCATTGTTTACTGATAACAGTTGGTACCGAGCCCGAGTGTTAAAAGCTGCTGGACCCAAAGAAATAACAGTCATATATATCGACTTTGGAAATATCGAAGTTCTACCAATATCAAAGATACGGGCGTTACCCCACGAATTTACCAGTATGAAACCTCAAGCAGTCGAATACAACTTGGCGTTAATTCGAGAACCAAACGATGTAAGTTAA

Transcript

BRAKERXEIT00000049084

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5REU4	Staphylococcal nuclease domain-containing protein 1 OS=Pongo abelii OX=9601 GN=SND1 PE=2 SV=1
Q863B3	Staphylococcal nuclease domain-containing protein 1 OS=Bos taurus OX=9913 GN=SND1 PE=1 SV=1
Q7KZF4	Staphylococcal nuclease domain-containing protein 1 OS=Homo sapiens OX=9606 GN=SND1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005312 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00567 all species →	TUDOR	Tudor domain	Domain	Interproscan
PF00565 all species →	SNase	Staphylococcal nuclease homologue	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035437 all species →	Homologous_superfamily	SNase-like, OB-fold superfamily	Interproscan
IPR047386 all species →	Domain	Tudor domain-containing protein 11, Tudor domain	Interproscan
IPR016071 all species →	Domain	Staphylococcal nuclease (SNase-like), OB-fold	Interproscan
IPR016685 all species →	Family	RNA-induced silencing complex, nuclease component Tudor-SN	Interproscan
IPR002999 all species →	Domain	Tudor domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12302 all species →	EBNA2 BINDING PROTEIN P100	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0004518 all species →	Molecular Function	nuclease activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006402 all species →	Biological Process	mRNA catabolic process	Interproscan
GO:0031047 all species →	Biological Process	regulatory ncRNA-mediated gene silencing	Interproscan
GO:0031332 all species →	Cellular Component	RNAi effector complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERXEIP00000049084.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.