Detailed information of BRAKERXEIP00000049375.1 in Muricea muricata

Genomic Location: chr6:1124254...1147250
NR annotation: XP_028414205.1, lymphoid-restricted membrane protein-like isoform X2 [Dendronephthya gigantea]
Species Muricea muricata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003528 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF14662
all species →
KASH_CCDCoiled-coil region of CCDC155 or KASHCoiled-coilInterproscan
PF05781
all species →
MRVI1MRVI1 proteinFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR028170
all species →
FamilyProtein KASH5Interproscan
IPR028168
all species →
DomainKASH5-like coiled-coil domainInterproscan
IPR008677
all species →
FamilyMRVI1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47300
all species →
PROTEIN KASH5Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000781
all species →
Cellular Componentchromosome, telomeric regionInterproscan
GO:0000800
all species →
Cellular Componentlateral elementInterproscan
GO:0005640
all species →
Cellular Componentnuclear outer membraneInterproscan
GO:0007015
all species →
Biological Processactin filament organizationInterproscan
GO:0007129
all species →
Biological Processhomologous chromosome pairing at meiosisInterproscan
GO:0034397
all species →
Biological Processtelomere localizationInterproscan
GO:0034993
all species →
Cellular Componentmeiotic nuclear membrane microtubule tethering complexInterproscan
GO:0051225
all species →
Biological Processspindle assemblyInterproscan
GO:0051653
all species →
Biological Processspindle localizationInterproscan
GO:0070840
all species →
Molecular Functiondynein complex bindingInterproscan
GO:0090172
all species →
Biological Processobsolete microtubule cytoskeleton organization involved in homologous chromosome segregationInterproscan
GO:0090220
all species →
Biological Processchromosome localization to nuclear envelope involved in homologous chromosome segregationInterproscan
GO:0090619
all species →
Cellular Componentmeiotic spindle poleInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for BRAKERXEIP00000049375.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Muricea muricata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Muricea muricata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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