Genomic Location: chr6:1124254...1147250
NR annotation: XP_028414205.1, lymphoid-restricted membrane protein-like isoform X2 [Dendronephthya gigantea]
Species Muricea muricata · all data for this species · gene families
| CDS |
| BRAKERXEIT00000049375 |
| Transcript |
| BRAKERXEIT00000049375 |
| Protein |
| BRAKERXEIP00000049375.1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003528 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF14662 all species → | KASH_CCD | Coiled-coil region of CCDC155 or KASH | Coiled-coil | Interproscan |
| PF05781 all species → | MRVI1 | MRVI1 protein | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR028170 all species → | Family | Protein KASH5 | Interproscan |
| IPR028168 all species → | Domain | KASH5-like coiled-coil domain | Interproscan |
| IPR008677 all species → | Family | MRVI1 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR47300 all species → | PROTEIN KASH5 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000781 all species → | Cellular Component | chromosome, telomeric region | Interproscan |
| GO:0000800 all species → | Cellular Component | lateral element | Interproscan |
| GO:0005640 all species → | Cellular Component | nuclear outer membrane | Interproscan |
| GO:0007015 all species → | Biological Process | actin filament organization | Interproscan |
| GO:0007129 all species → | Biological Process | homologous chromosome pairing at meiosis | Interproscan |
| GO:0034397 all species → | Biological Process | telomere localization | Interproscan |
| GO:0034993 all species → | Cellular Component | meiotic nuclear membrane microtubule tethering complex | Interproscan |
| GO:0051225 all species → | Biological Process | spindle assembly | Interproscan |
| GO:0051653 all species → | Biological Process | spindle localization | Interproscan |
| GO:0070840 all species → | Molecular Function | dynein complex binding | Interproscan |
| GO:0090172 all species → | Biological Process | obsolete microtubule cytoskeleton organization involved in homologous chromosome segregation | Interproscan |
| GO:0090220 all species → | Biological Process | chromosome localization to nuclear envelope involved in homologous chromosome segregation | Interproscan |
| GO:0090619 all species → | Cellular Component | meiotic spindle pole | Interproscan |
BRAKERXEIP00000049375.1.Genes whose expression across the transcriptome samples of Muricea muricata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Muricea muricata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |