Gene detail

Detailed information of BRAKERXEIP00000050396.1 in Muricea muricata

Genomic Location: not available for this species
NR annotation: CAB3980851.1, Hypothetical predicted protein [Paramuricea clavata]
Species Muricea muricata · all data for this species · gene families

Sequence

CDS

BRAKERXEIT00000050396

ATGTACTGTTGGCCTTTTCGCCGCGCTTTGGTGTGTGATCGGTTACTAAAAATTATAGCAAATGCTTTCTGCAAACCTGTATATACTTGTAAACGTCAATACACGTTTAAAATTGTGGGCAAACACAATGGAGAAAGTGTTAATTGTGCAAATTCATCTAGACGTGCGTTCTGTGTGAATTCGAACAAATATCAAAAACACATCGATTCTTCGATCAAGATTCCTCGGTTTTTACGTAAAACTAAAGACAAGGAACAGATCCACCGGTATTACCTTATAAAAAAACTGTGTTTGCAAGGGGATTTCGAATTAGCCATTCCAAAGGTGGAAAAATGGCTTTCAAACGAAGAAGTGTCAAGGGGCACGATTTTGATACTAAATGGTCTGTTGTTTTCTTTATTTGAGCAAGAGAAAACTGAGGACTTTATGAGATTAAAGAAAACTATGGATGAGTATGATATTAAAGGAGACAGAGCAACGTATACTGTACTTATAGACAGTTTTGGTAAAATAGATAATTTGGGAATGGTGTCAGATCTCCTGGACGAGATGACCAACCAGAACATAGTACCTCATTACAGGTCATATATGGTAGCGGCGGAATTGAGTCTCAATGAAGGGAGGTTTGAGAAAGCTCTTGAATATTTCTTGAGAATTGACAGTGTTTTTAAGGAAAGTCATGATACGTTTTGTGCAGCATTCATTTCGAATCTTGTCAGGAACAAGGAAGTTTGTGCTATACAGAGTGTTTTTCAGGACTTCAGAGAAAATAGGACAAGACTTGGTAAGGGTACGATGGCAGCAGTCGAGGAATATTTCCACAGTGATTGGTCTGAAGGCAAATGGAAAACTACCAGAACAACCATCTCTACAAGTGGAGTCTGCCAGTGCAAGAAAAAATTGGAAGAAGCAAAATTTGGAAAACCTGAAGAAAATCTTCATGTGTATTTCAAGGAATTGATAAAAAATGAATTAGATTTGGAAGAAGTGGGAAGAAAGAAAGATAGATTACAAGAACTGTTCAAATTGCTTGAGACAGAAGGACCATTTGACCTTGTGGTAGATGGACTTAATGTTGCCATGCATCCCAGATATGGTGTTGACTTTGATGCGTTGTTTAGATTAGTGGAAAATTTTTCGTCTCGAGGTCAAAAAGTCTTAATCATTGCAGCAAATGAATTAATCAATCCAAAAAGATCCAAAACAGTTTCGCCTGAAAGCCATCAGAAAGCAATAGCATATCTTAGAGATATTTCAACTGTTTATTTTGTGAagtacaacaagagTTTGCTTGTCTTTAGTGGTATAGATGATCTGTTCCTGATTAATGCTGCCATGCAATTGTGTCGTGAGAATAATAATGTGAGGATTGTCAGTAATGACAAGTTCATGGACCATCGTGTGAACATGAATCCACAAACACTGAGTTATTTTGAACGATGGCTTTCACAACATCAGATCAAGGTTCATTGGTATGATCGTAACAGAATGAAAATACTTCCAGGGCGATTGCCTATCGCAAAATTGAGGATTCTACTTACTCATTGTTGCAACAAGAAGATAGATAAAGAGAGATATGTGTTAAACAACCAAAAGTTTGAGCAAGTGATGAGTAACTGCGTTGATAAATTAAAGAACAGAGCTGGGACAAGAAGAGTTTTCAACTCTGGACACAATTCCAAAACAAACTGCCTGAATACAAAAAGCTTTGATGAAAACAACAATCCCATCAACAGAGATCTTATCTGTGCTGTCTGCCGTACACAATACCACAATCCAAAACTGCTACCGTGTTTGCACACGTTTTGTGAAAGTTGTTTGGGAAAGTATGTTGAATGTTTGGACGGAGAATATTACGTCATGTGCCCATTGTGCGGCACGCGCAAAAAGATAAAGTCGCAATCGGACGCTGACCACGCGCGTCTCGAGGAACTCGTCTCTGACTTCGTCGCGCTGAACTTGCTTGACACTTGCGCGATTGATGTTGATAATCTGGATGATGCAAACTGCACTAACTGCTCGACCAGCGCGCAAAGTCGATGTTCAGAGTGCGCATCGTTTCTTTGCGTGAACTGTCAACGTGCGCACAAGAGTAACGCGCAGACAAGAGATCACAGCGTCTGTTCCTTGGCTTTACTTGGTCTGAAATCCTCCTCCCAGAATTTCCGCGCGGGAGACTACTGCCGAGCTCATGCAGGTCACGGCAGTTGTGCCCCGGAGAAGACGAAATGTTCAGCATTTGGTCACCGGGGAAGTGTCCCGGGGTGTTTTAACCAGCCATGTGATGTTTCCGTACGGAATAACGGCCATATACTAGTCGCCGACACGTGCAACCATCGTGTTCAAATATTCGATGCAAAAGGAAAATTAATTTCGAATTATGGGAAGCAGGGTGGAAGTCTTGGTCAATTGTCATTCCCATCGGGCATTGCGATCTCGCCTCATTGTCACGTAATTGTTAGTGACCATCGCAACCATCGCGTACAAGTTTTTACTTCCGCGGGCGTGTACTTGAGATCATTTGGGGGAAAGGGGAGCACTGAGGGATTGATGTGCCATCCCACAGGGATAGCAATTGATGAAGAAGGGCATATAGTAGTGGTCGAAATGGAAAGTTTATACATCAGTTCGGTAACTATGGTAACGGAAGTGGCCAATTAG

Transcript

BRAKERXEIT00000050396

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
D2GXS7	Tripartite motif-containing protein 2 OS=Ailuropoda melanoleuca OX=9646 GN=TRIM2 PE=3 SV=1
A4IF63	Tripartite motif-containing protein 2 OS=Bos taurus OX=9913 GN=TRIM2 PE=2 SV=1
F7H9X2	Tripartite motif-containing protein 2 OS=Callithrix jacchus OX=9483 GN=TRIM2 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003936 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01436 all species →	NHL	NHL repeat	Repeat	Interproscan
PF00097 all species →	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF16953 all species →	PRORP	Protein-only RNase P	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR011042 all species →	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR001258 all species →	Repeat	NHL repeat	Interproscan
IPR002885 all species →	Repeat	Pentatricopeptide repeat	Interproscan
IPR047153 all species →	Family	TRIM45/56/19	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR000315 all species →	Domain	B-box-type zinc finger	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR018957 all species →	Domain	Zinc finger, C3HC4 RING-type	Interproscan
IPR031595 all species →	Domain	Protein-only RNase P, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR25462 all species →	BONUS, ISOFORM C-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERXEIP00000050396.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.