Gene detail

Detailed information of BRAKERXEIP00000051477.1 in Muricea muricata

Genomic Location: chr7:403445...411520
NR annotation: CAB3982235.1, tonsoku isoform X2 [Paramuricea clavata]
Species Muricea muricata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERXEIT00000051477

ATggatgaaaaattagaaaaagaACTGAAACGTTTGAAAAAACAAAAGGAAAAAGCCAGACAAGCTAAAGATCGTTCAGAAGAAGCAAGTCTGTGCAATATCACTGGAGAGCTCCTGGCTCAACACAGGCTGTTTGAAGAAGCTATTCAACAACACAATGCAGAACTGAATTTGTCAGAATTGCTTCGTGACCACATTGCAGTCGGAGTTGCACATCGCAAAATTGGAGAATGTCTATGTGAACTTCAAGACTTTAAACAAGCTTTGTTTCATCAACAAAAACATTTAGAGATATCAAGaagatttcaaaatattgttgaaGAACAACGAGCTTTAGCCACCATTGGACGAACATTATTTCAATCAGCTTGTTCATCTTCAGATTTTGAGAAAGCAAAGACTGCCTTCACAGACAGTTTATCCATATGTGGAAAGCTTGTTGGTATAGTAAAAGAAAAAGAATTATTAGAAATGAAAGCGCGGCTTTTTCTTAATCTTGGACTGGTGTACAATCTGCtggaaaataaaaagaaaggaatGAAATATATTTATGGTGCGCTGAAAGTTGCTGGGAGCGTAGATCTAAAAGATACTGAGTACAGGTGTCATTTCTCACTTGGAGAGATTCACCTTGCAGAGAATCGTCTCAATGAAGCATTAAGATCCTTTGAACATGCTAGAAAGGTTGCGCAGCATCAAAAGTTGGCATTTGAAGAAGCTGATACCCTAGTTCAAATGGCGCAGGTTTTACTTCAGTTGGGTGACTTCAATGGAGCTAAAAATATTCTGAAGAAGTGTTTTAAAACCATGAAACATGGTGACATGATCGACAAGCTCCGTTCAAGTTTGGCCAAATCCATAAAAGGAACAAGACTTTTGGAGACGCTTGAGAATCACAGAGGAACTGACCGTGAAACATTGATGAAGACATATGAAGATCTTGGTGATTTGTATGCAAGTGTGAAGTGCTTTTCAAAAGCTGTCAATTTTTATGAGAAGCAACTGCAATTGAGTGAAGTCCTTGGAAAGACAAGTGATGAAAAGGCAGTAATATGTTTCTCCATAGCCCAATCATATTCAGATTATAAGCAGTATAACAAGGCAAAGGAGTACTTTCAGAAAGAACTAGTGTTACGAAAGGATGATCCCAAAGAACAGTGTGATGCCTGGTGTAATATAACTCTGATGTCAAAACTAGCTGGGGACAGTCGCGAGGAGGTTGAGAAAGCATATAACAATGCTCTAGAGATGTGTGAGAGCCTGACAACAGAACAACAGGAATTGCTGCTGTGTGAAGTAAAAAGGAAATTAGACCCAATTATTGCAGATCCAAACAACCACAACAGCAAGGAACAATGTGAGTCCATGGAACAGTCACAGTTTGATGAATTTGACAACGATGAAGCTGAACAATTGATTCAGGAGGAAATGGAACTATCAGACTCTGATGACGATGAACAGAATGATGAAATGGAAAAATCATCTACTGTTAGGTTGAAAAGTAACTCAAAGTCTGTCAACAAGCGCAATGAGAAAGGTGAGACAGTTTTGCACGTGGCTGCGATCAACGGAAACTATTCTGCAGCAAAGAGTAGTATTGAGAAAGGAGTTAGTGTACACGAACGTGATTATTGCGGCTGGCAACCACTGCACGAGGCCTGTAACCATGGAAATCTGTCTATTGTCGAGTTGCTGCTTGATAGAGGCGCAAATATTAATGATCCAGGGGGACCTCATTGCGGAGGAATGACTCCATTACACGATGCTGTTCAGAATGCTCATGTTGATGTCGTGAAATTGTTAATTGCCCGAGGAGCGTCAGTTAATCTGAAAAATAAAGATGGCCACACCCCTCTGGACCTCGTGATGCAGTCGATCGATGACGATGAtaacgatgatgatgatgagctTGATCCTGACGTTGGTGAAATCCGAGAAGAGCTCGCTGGAATTCTTAGAAATGCTAAGAATTCTGGAAAACGTCAGCCAGTCACTTCAGGAGAGATTTCACGGAAACGAAAAATCGCTATCGAGCTTGATAGCGACGAAGAGAGCACTCCAAAACATTCTAGTACAGAACACAGAGCAAAAGTTCCAAAAGTTTCCAAGCATGTCGATAGTGGGCCGTTGTTTGAAGATGACAGTGAGCCAGTAAATGATCAATGCTTTCATGAGTTTACTGACTTCGGAACTTCTTCATTTTCAACTGAACCAGCTCAAAGAAACACAAATAACCGCAAAATTCCTTCCTCCGAGGAACATAATGCAACTTCGTGTTCTTTCTCAAAAAATAACACTTCGAGTCCTAAACCATTTGCTACAAACGCAGTATCCAGGACGAACGATCCACTACCTATGAAGAACGGTAAAAGTATCACGTATGTTAACCCTGTAACTGGAAACACCCAAGAAGATTGTGAGATCTCGGAAAGTCAACCAGCTCTAATACCAGAGAACGAGTACATTGCCACAGATGATTGGCTCATTAACGATCTACCAAAACCAACTGGAAAACGCAACTCCGCATCGTCACGCAATATTTCCACCTTCTCAAGTACTCCATCGTCCTCGCGCATGCGTACTACATCAAATGCATCACCTCCTGGTACCCAAAGCACTCAAGTCGTTGGAATATCAAAAGGACGTAGAACTACTCCGAATGGTGGCAAAAACAGATTACGACAATCCCACCTCACTCTTGTCAGCGGTCGTTCATCACTATGTTCATCACCCAATGAAGCTGAGCCTGCGACTACAGCATCGTCCAGTGGTGTTGCTACAATGGCAGAGGCGCCAATGAGGTTACGTGTGCAGGTGGAAGACAAGAAGTTTCTTATACCTTGTCCCAGCATCCCTGGCGAGAGGAAGACTGTGCAATGGCTAGCTGAACAGGCGGTATTTCGCTACCATTCGGCTACTGGTTTAAAACCCATCTTATCCCTATGTACCACTGAAGGTGCCTCGCTATCCACCCATGATATCATTACAGAAGTGTTGTCTAACAACGAGCTGGTCAATGGAATCGTGGAGTCCTGGGATCTACCTCCACTAGCTGAGAGATACAAAACAGCGTGTCTCATGGTTAACACTGAGACGGAGAAGAAAATTCTGGATGTTTTTGAAAGATGTCCTCATATTGTTAATGTTGAATTTAGTAAATTGTCACTAACACCTGGGAAGGTGCTGCCATTATTTCGTAGTCTGCAATGCCACGATGAACTGGTGAAGCTTGTGTTGGCAGGCAACAAAATTGGTGATGTTGGCTTACAACATTTAATTTCATCTTTGCCTTGTCTTACGAACCTCTCTATTCTCACTCTCGCTTGTAATGGTATTACTCCTACTGGACTGCGAAATCTGGCATCAAGCTTGTCTCAAGATCACAAGGTCTCTAAGGCGTGGTCAAATCTGAAAGAGCTAGATATCTCGTTCAATACAATCACAGATGTTGCAAGCTCTAGTCTCGCTTTTATTCTTCGCTCCTGTCCAAACCTCCTCAAGTTGGACATTGAACATTGTTCTCTGACTCAAACCTCTTTCCTTCAAAAGAATACGTTAGTTGAAGCGCTTCAAGATCTGAAAAGGCTGCAGGATTTAAACGTCTCTCACAATCTTATCCAATCAGTCTCCATACCCTTTCTTCTCCGAGCGTGTCCTGTTGAAATTTGTAATTTAAACTTATCTTCAACCGTGAGCGGTCATGATCCTGCATTTGCATCTGTTTTGGCTGAGTATTTGAAAATGGAGAGTTGTAGTATTCAACATCTTGTCTGTCGTTGCTGTTACCTGGACGATACGGATGCATTAGTTCTCGCAAGAAACCTGACAGTGTCAACATCGTGTTCCAAACTAGATCTTGGTGAAAATAACATATCCGATGAAGGAGTCGCGAAACTTATTAAATCAGTGCAACACAATCCGAATGTGAAAGAACTAGTCTTATCTGGTAATCGTCAAATAACGAATGAAAGTTGGTCAAAGTTTTTTACCTCGCCATTAGCTCTCACATCTTTGGATTTATCGCACTCTGGTCTCCGCTCACCACTCCCTGAATGTCTATTCAAGCCCTCTGCTTTTCCAAGACACCTGATGTTCCTTGATTTATCTTTCAACTCGCTGCATTCACAAGATATCCAAAGGCTGGTTAGTTTGTGGGAATTAAAATGGCAGGGAAGATTAACTAGAGTGCGTCGCTCGAGATCATTCGTCGTACTTGAAGCGAACTAG

Transcript

BRAKERXEIT00000051477

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A9JR78	Tonsoku-like protein OS=Danio rerio OX=7955 GN=tonsl PE=2 SV=1
Q0P5G1	Tonsoku-like protein OS=Bos taurus OX=9913 GN=TONSL PE=2 SV=1
D4A615	Tonsoku-like protein OS=Rattus norvegicus OX=10116 GN=Tonsl PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004073 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13516 all species →	LRR_6	Leucine Rich repeat	Repeat	Interproscan
PF13181 all species →	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF13857 all species →	Ank_5	Ankyrin repeats (many copies)	Repeat	Interproscan
PF13637 all species →	Ank_4	Ankyrin repeats (many copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052311 all species →	Family	MMS22L-TONSL complex component	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46358 all species →	TONSOKU-LIKE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000724 all species →	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0031297 all species →	Biological Process	replication fork processing	Interproscan
GO:0043596 all species →	Cellular Component	nuclear replication fork	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09257	NFKBIL2; NF-kappa-B inhibitor-like protein 2	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.