Gene detail

Detailed information of BRAKERXEIP00000051786.1 in Muricea muricata

Genomic Location: :...
NR annotation: XP_028407873.1, RNA-binding protein 5-like isoform X2 [Dendronephthya gigantea]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERXEIT00000051786

ATGCGTAGAGTTGTGGGGTTAAGTCAGATTCATCAAATTTTGGCGGAAGCCAAGCTGCCTTACAAAGATGTCCGTGTCGTCAAAACCAGAGAAGGATATTCCAGAGGTTTTGCTTTTGTCGAATTTCTCGACACGGAAACGGCGAAAAAATGGATAAACGAGTGTAAGGGAAGACTTGTCATCGAAGATGTCTCTGTCATAATGGATTTCAGTCGATCAAAGATGGCTGCCGAGTCTCATAGAGATTGGGTATGCAGCAAGTGTGGCACTCAAAACTTCTCCTCAAAAAGACGCAACACATGTTTTACTTGCAACACGCCTAAAGACgAAAACGATGAAACCAAAGAACTTGGTACGACGCCATGCAAAGTTCTCATTCTTCGAGGCTTGGATATACTCACAACTGAAGAGACGATTCGACAGACGTTGGCTTCGTTTACTTCAATACCCATCTTCGATGTGAGACTTATCAAAGACAAGCTGACTGGAACGTCAAGAGGATTTTGTTTTGTCGAGTTAGGATCTATCGAAGAAGCGACTCAACTCCGAGAAGAACTGCAAGCTGCCTCGTTTAAAATTGATGAAAAAGTTTTGGTGATATCTTACGCCAAGTTTAGTACGAATCCGACAAAGTCGGGAACTGTGGCAGTCGGCAGTAGCTCATCCAGCTCTGCTACGACGGTCACGGAGACATCGACCACGTCAACAACAGCGAACCAATCACGTTCAAACTTTGCCGCCAACGCAATTGCTCAAGCCCGCGCGGCCGCGCAAATGGGACACACCACTGACCCCCACTCAATGGATCATTACTCCTCAGCAGAGGGTACTGTCTCAGCGACCCAAACAGTTTCCTCTACAGTCCCGGATTCTACGTCAAGCACGGCTGCTTCAACCGAAGCCTCGTCCAGCACTCCAGTTGATAGCACAGCTCAGACGCCTGCAGCCCCACAGACTATATCGTCATACGTATATGATGCAGCCAGCGGTTATTACTACGATACAACCACAGGACTTTATTATGACCCGACTACACAGTATTATTTCAACAGTGCAACGCAACAGCACATGTACTGGGATGCTGCAACACAGCAATATGTGACCGTCGTATCGTCTGCTACACCCAGCGATACGCAAACTGCTGCCTCAGGCGAGTCCGCTTCAAATGAAGGGGAAAATACCGCCACCAGCaaagAAAAGCAAAAGAAAGCGAAAAGTTTAAATGCGAAAAAGATCGCGAAAGACATGGAAAGATGGGCGAAAAAACAAGCAAAGAACAAGGAATCTGCTCGTCCCCAGGCTGCTACACAGGCAGCTCAAGACGCGGTCAAAGAAAGTACATATCAATACGATCCAAATGATCTAAAGGGCGGTattaaaatgagtttgactggcacTGCTAACATAACTGCACTCGCTACGACAAGCCCGCTGGCCGCACTATCTGAGCTGGACGATCCTGCAGCTATCTCGGCACCCTCTGCAGCGGCGAGCAGTCTTGTGCCAGAATACGGAGGTGAAGATTCCGGGGGCGAGGATGACAGTAAGGAAGAGAATTACACGGACTGGGCAAAAATGGCGTGTTTGTTATGTAAACGACAGTTTCCTTCAAAAGAAGCTTTAACCAGACACAATCAACTGTCAGATTTACACAAGCAAAATATGATGGTCCAAAAGAAGTTAAAAATGTCTTTTTCTGAAATAAACGAATATGAAAAACAACAGAGAGAGCAAAAATATCGCGACAGAGCGAAAGAAAGAAGAGAATTGTTTGGTCAACCAGACTCAGCTCCAGCCTCAggcaagaaaagaaaaaaaggaAAAGTAACGTACGAGCAACCCACCAAAGATGGCATCCAATCTGACAATATCGGCAACAAAATGCTTCAAGCAATGGGCTGGACGGCCGGTACAGGATTAGGAAAAGACAGACAGGGAATTGTTGACCCAATTTTGGCGAAGATGCGAAACCGTACGGCAGGTCTTGGTTTGAAAGGCAGTGACTATGGCGCAAGTGCTGGCGACTCCGAAAGAGACATATTAAAGAAAATGGCGCAGTCCCGTTACGACGATGCCTGA

Transcript

BRAKERXEIT00000051786

Protein

Uniprot

Uniprot term	Description
A0JMV4	RNA-binding protein 5-A OS=Xenopus laevis OX=8355 GN=rbm5-a PE=2 SV=1
B2GV05	RNA-binding protein 5 OS=Rattus norvegicus OX=10116 GN=Rbm5 PE=1 SV=1
Q1RMU5	RNA-binding protein 5 OS=Bos taurus OX=9913 GN=RBM5 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF01585	G-patch	G-patch domain	Family	Interproscan
PF17780	OCRE	OCRE domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR000467	Domain	G-patch domain	Interproscan
IPR036443	Homologous_superfamily	Zinc finger, RanBP2-type superfamily	Interproscan
IPR041591	Domain	OCRE domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13948	RNA-BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan