Gene detail

Detailed information of BRAKERXEIP00000051848.1 in Muricea muricata

Genomic Location: not available for this species
NR annotation: CAB4006392.1, muskelin-like [Paramuricea clavata]
Species Muricea muricata · all data for this species · gene families

Sequence

CDS

BRAKERXEIT00000051848

ATGGCGGCGACGTcgagtaattttgaaaatataaaagttgAAAATATGGAACATAAATTGAAATATTCTGTCTATTCCTGCTCGAGCTTCTCCGCAAATTTCCACCCAGAtaatattttagAAGACAAACCCAATGATCAAAATTCTAGATGGACATCTGAAACATACCATCCAACTCAGTATATAATTCTAAAGTTGGAAAAACCTGCAGCAGTGACAAAAATAACATTTGGAAAATATCATCAGAATCATGTTTGTAATTTGAAGAAATTTACTGTTTATGGAAGTTTACATGATGATCAGGACAATATGATGGAACTATTACAAAGTGGTTTAAAAAATGACAATGTGAAAGAAACGTTTCCACTGCGGCATAAATTGGGCGAAAATATTTTCCCTGTCAAGTACATCAAAATAGTTCCGACGATGACATGGGGACAAAGTTTTAATTGTAGCATTTGGTTTGTTGAGCTGACTGGCATTGATGATGCAACTATTGTTAAATCTTGTTCAAACTGGATTAATAATTACCGGGAACGCGAGGCGATACGTTTGTGTTTAAAACATCTTCGACAGCGAAACTGCACGGAGGCTTTCGACTCATTGAAAAAGAAGACCAAAGTCGAACTGGAACATTCAATATTGACTGAATTACATGAACAACTGGTTGTTCACTCAAACTTTGATATGGCAGAAAGCATAGTTGAGAACGCTGCTCATGATGGTTTGTTCGGTGATTATATAAGCAGTCAAGATTACAAAGCAAAATGGACTCCAATAACAGCAACTGTCTCAGATACGAGCTCAGATGCTTGTCAGCCCGGAATGCGGGGAGGACATCAGATGTGTATTGATACAGAACGACAGATCATCTACCTCATGGGAGGCTGGGACGGTAACGACGACCTCGCTGACTTCTGGATGTTTGACATCAACCAGAAATCATGGAGGATGATATCACGTGACACGGAACAGGACGGAGGCCCGTGCGCACGTTCATGTCACAAGCTCTGCCTCGATCATAagagaaaactgatttttatgTTGGGGAGATATCTTGATTCCGAAGTTCGAAGCACAATGTCGTTAAAGAGTGATTTCTTTGTGTACAGTATTGATTGTGAGCAGTGGACGTTGATATCTGAGGATACAGCTGCGGATGGTGGTCCTCCATTGATCTTTGATCATCAGATGTGCGTCAATGTTGAAAACGGGATGATATATGTGTTCGGAGGACGAGTGTTAACCAATGCATCATCAGACATCGCTGGTTTGGCGGGTTCGGCGATCTTCAGCGGCTTGTATCGCTATGATAGTGGCACGAGTACCTGGACATTATTACGGGACGACTGTCCTGACTTAATATCAAGAATTGGGCATTCTATGCTTTTTTATGAGAAAAATCGAGCGCTCTATATATTTGCTGGTCAAAGAGGGCGAGAATTTTTAAGCTTTCAGATTTACATTCTTCCTCCTTCACAAGGAACATGCCGGCTAAAAAAGTATGCAATACCATCTACATCCATTTCAACAAGTGCAACCTCATCAGATGAGTTACACAGCATGGTTTATTCCAACAAGAGACCATTTCCCTCTTTGGATCCCAAGAATCTCCCACCACCAGCAAAAATTCGAAGAACTGCAACGACAGACGAAAGAGAAGAGTTAAAATCGAAatATAATCTTAAAGCTTCACCCTCAGGTAGAAGATACACAGATAAAATAAAGGAATTTGCAGTAACTCTTCACTGCTACTCACCAAGTGCATATAAGTATGCGAGATCCAGTGTTCCACTGCCACATCCATCACTTGTACGGAAATGGTCGTCATCATTTAAGTGTGAGCCAGGATTTATTGACGAGGCATTTACATCACTCTCAGACAAGATTACCAGCTCTCCAAATGACAAAGACTGTTGCCTAGTATGTCAATACGCAAGCAGTCTTTGGAGTCCTGAAAAGGATCAATATTCCGGATTTGTAGACTTTGGAGATGCCATTCCAAATAGTGGGTCAAAGAAATTGTCTACAGAGGCGATAGTCTTCCTCTTGGTGGGCTCCAGGAGTCACTGGAAATGTCCAGTAGGATACTTTTTGGTTGACAAAATTACTGCTAAAGACCAAGCGAAGTTAATACTAAAATCCTTAGAAACGACTGCTAATGCTGGTTTAAAGTTTGGTCAGTCACTGCAGATGGCACTGCAGTCAACCTTAAGACATTTGAATTACTTGGTTGTAAATTTGATGGAACATATGatgaatttaaaacttcatttaCTCACCCTTTAA

Transcript

BRAKERXEIT00000051848

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UL63	Muskelin OS=Homo sapiens OX=9606 GN=MKLN1 PE=1 SV=2
O89050	Muskelin OS=Mus musculus OX=10090 GN=Mkln1 PE=1 SV=1
Q5RB35	Muskelin OS=Pongo abelii OX=9601 GN=MKLN1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004304 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13415 all species →	Kelch_3	Galactose oxidase, central domain	Repeat	Interproscan
PF06588 all species →	Muskelin_N	Muskelin N-terminus	Family	Interproscan
PF12017 all species →	Tnp_P_element	Transposable element P transposase-like, HTH domain	Domain	Interproscan
PF21787 all species →	TNP-like_RNaseH_N	TNP-like, RNase H N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052456 all species →	Family	CTLH complex component protein	Interproscan
IPR010565 all species →	Domain	Muskelin, N-terminal	Interproscan
IPR021896 all species →	Domain	THAP9-like, helix-turn-helix domain	Interproscan
IPR015915 all species →	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR006594 all species →	Conserved_site	LIS1 homology motif	Interproscan
IPR048365 all species →	Domain	Transposable element P transposase-like, RNase H domain, N-terminal	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15526 all species →	MUSKELIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23337	MKLN1; muskelin	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.