Gene detail

Detailed information of BRAKERXEIP00000052663.1 in Muricea muricata

Genomic Location: chr8:10091825...10105843
NR annotation: XP_028398244.1, E3 ubiquitin-protein ligase RNF123-like [Dendronephthya gigantea]
Species Muricea muricata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERXEIT00000052663

ATGGAAGTTAACAACTTTTTGGCGTCCGTTTTTTGTCCTGATAGTTGTGAATCGACGGCAACTCCAAGAAATTTGCTGGAATTTGGAAACTTGCAAGAACATTTGGAGAAAGTTCTTGCAGAACACAACAATGAATGTGTGCCAAGTTATACAGAACAAGAGAGAGCTTTATCAGATGGAAGAATTGGACCAGAGATTGTCAAAATTGATACAAGTGGTCGCTGTGGAAATATGGATATATCAGAAAATTTGGAGCTTGATAGTCAGAGCAATTTTAGCAGCTTGAGAGCAAATGTTTGCATTTGTAGAGGCAAATGGATGTTTGAAGTTTTGCTTGGAACAAGAGGAATAATGCAACTTGGTTGGGCAACTGTTAACTGTCAGTTTACAAATGAGGAAGGTGTTGGCGACACTGCCGACTCCTATGCGTATGATGGTCATCGTGTTAGAAAGTGGAATTTGAGTGCCTCTGCATATGGAGAGGAATGGATGGCTGGCGATGTAATTGGTTGTACATTTGATCTGGGCAGTGGTGAGATTTCGTATTACAGGAATGGCGTGAATATGGGCGTGGCTTACACGGATGTGCCACGTGGTGCTGGCATTGCATATTTCCCTGCAGTCAGTTTGTCCTACTGTGAATCTTGTCATCTTAATTTTGGAGCGACGCCATTTCTATTTCCCATCGAAGGTTTCAAGCCTCTGCAGGACCCGCCCAATGTTGAACTTTCTCAAGCCAAAGAGCTGCTGGATTTTCTGGGGCGTGTGTTACCTGGACCACAACGAATTCCTAACATGCCGACCAATTTAAGTGGAAGAGCTGCAACATTGGCCTTGCTTACAAGTTCACACATCTTTGACAAACTTGCTCCACTTCTGACAAAGTCTTACATTGTTGAAGCAGCTCTCATACCGTTTCTACTCAAGTCGTGTTCAGACACAGCTAACCCGTGCGAGATCCATCCTGGTGTTATGAAAATGCTAGACTTGATGTGGGCGTGCATGGAGAATTTTGAAATCCTGCCATGTTTGAAGCATCTCTTTTATGGTTTGCTCAAATCTTATTGGCATCGCCCTGTTTTAGCTGACTTCAAAACACAGAAATTTTGCTACTTCATGCATATCCGCCCCCCTGATGATGCAGTTTTAGTTGAGTTGTTTCCAGTCGTTCTCTACGAGGAGAAAGAGGCAGGCATACCTTTGGCGAGCGTAAGCGATGAAGAGAAGGAACAGCACAGGAAAGACTGTGAGAAACTTCAGACAAAAATCAGAGTTTTAGAAACTATTCATGTTGAAATGTGCAAGATTCTGTTACAAGACGAGCGTCAAGAGGGCTCTCCTTCAACAAGATCTTCATTCTTGGAAAGatttagaaaatatttgcaGGAAAATATGTTCATTGCGCTTAGCTCTCATCCACCAAGCTCGTGTTCTGGGCCTGTGTTGACATGTTTCTTTCATCGTTACATGCAAGCTTTGAAATGGCACTGGAATAAATGGGCGGAAGACAATGGCTCGGACATCACATCACAGAatttgTTTGTTCCTGTATCTGCTTTCGTTGATAAAAACATCAATTACTTCGAACTTTCAAGAATTGGCGGCATAACATCACATCTGAGAAAATCACATTCAGAGAAACTTAGGAATTCATGTTCTACCGAGACAAAAGATGACACGGGTATGAAAGCAAGCGGGATTGCTGGCGGAACTTCGTCGTCAGAATCTTATTCTGGTGTCGATATGTCTTTGATTGAGGCGGTTGATACCTTAATCATGTTGTATTTCTTTGGCGTTCATCGACAGTTCAGCAAGGTGCGCAGTGTACGTGACAACCTGCATCAGAATATCAGAGCTCTTGAGGAGACTGACAAAAAGATTAAGAAGTGTCCTAAAGATAAATTGGATGTTCTCGCCGAATTGGAGCGTTCTCGGAAAGTGTTTGCGAAGGAGACAACCAACTGCACGCGGcagatggcgtgggttcgatcACTTATCTTTACTTCTGAGAAGCAGAACGATGTGTACTGGATGCTAAATACCGCTCTAAAGACTTTACAGAATGCCAAGCTTGATAGCACCATGTTCGATTTCGTGCCCGAGTTTTATATCGAAGCCATATGCAGTGGGTATTCGGCATTAAGGAATTTGTTTTCACCTACGGTAGCCTTCAATGACCTGACAGGTATTGTGAGAGAGTGTTTACAATCTTTATACTTGGAGTAA

Transcript

BRAKERXEIT00000052663

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0A5F9C6I2	E3 ubiquitin-protein ligase RNF123 OS=Oryctolagus cuniculus OX=9986 GN=RNF123 PE=1 SV=2
Q5XPI3	E3 ubiquitin-protein ligase RNF123 OS=Mus musculus OX=10090 GN=Rnf123 PE=1 SV=1
Q5XPI4	E3 ubiquitin-protein ligase RNF123 OS=Homo sapiens OX=9606 GN=RNF123 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002536 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00622 all species →	SPRY	SPRY domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043136 all species →	Homologous_superfamily	B30.2/SPRY domain superfamily	Interproscan
IPR045129 all species →	Family	E3 ubiquitin-protein ligase RNF123/RSPRY1-like	Interproscan
IPR001870 all species →	Domain	B30.2/SPRY domain	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR003877 all species →	Domain	SPRY domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13363 all species →	RING FINGER AND SRY DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0051603 all species →	Biological Process	proteolysis involved in protein catabolic process	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12169	KPC1, RNF123; Kip1 ubiquitination-promoting complex protein 1	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.