Detailed information of BRAKERXEIP00000053006.1 in Muricea muricata

Genomic Location: chr8:9445245...9447867
NR annotation: CAB4012186.1, mitochondrial inner membrane protease subunit 2 [Paramuricea clavata]
Species Muricea muricata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6AZD4Mitochondrial inner membrane protease subunit 2 OS=Danio rerio OX=7955 GN=immp2l PE=2 SV=1
Q8BPT6Mitochondrial inner membrane protease subunit 2 OS=Mus musculus OX=10090 GN=Immp2l PE=1 SV=1
Q5PQ63Mitochondrial inner membrane protease subunit 2 OS=Xenopus laevis OX=8355 GN=immp2l PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001838 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF10502
all species →		Peptidase_S26Signal peptidase, peptidase S26 DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000223
all species →		FamilyPeptidase S26A, signal peptidase IInterproscan
IPR019533
all species →		DomainPeptidase S26Interproscan
IPR036286
all species →		Homologous_superfamilyLexA/Signal peptidase-like superfamilyInterproscan
IPR037730
all species →		FamilyMitochondrial inner membrane protease subunit 2Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46041
all species →		MITOCHONDRIAL INNER MEMBRANE PROTEASE SUBUNIT 2Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006508
all species →		Biological ProcessproteolysisInterproscan
GO:0008236
all species →		Molecular Functionserine-type peptidase activityInterproscan
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0004252
all species →		Molecular Functionserine-type endopeptidase activityInterproscan
GO:0006465
all species →		Biological Processsignal peptide processingInterproscan
GO:0004175
all species →		Molecular Functionendopeptidase activityInterproscan
GO:0006627
all species →		Biological Processprotein processing involved in protein targeting to mitochondrionInterproscan
GO:0042720
all species →		Cellular Componentmitochondrial inner membrane peptidase complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for BRAKERXEIP00000053006.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Muricea muricata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Muricea muricata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix–
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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