Gene detail

Detailed information of BRAKERXEIP00000053791.1 in Muricea muricata

Genomic Location: not available for this species
NR annotation: XP_028415889.1, pyridoxal-dependent decarboxylase domain-containing protein 1-like [Dendronephthya gigantea]
Species abbreviation MMURI · all data for this species · gene families

Sequence

CDS

BRAKERXEIT00000053791

atggcggacaattccTCAATCGAGCAACAAGGAcaagaaattgaaaacaaaaacgACACGGATGAACCTAAAGAGCCAGGCCCTGAACAGACGGAAGACATATTGGATAAAAAGGAAACACAGAGTCCTATTGAGGAAGTCGTTGCATCTCTTTTAAATATAAAGAGtCAAAGAGACGATCTTCAGCCTGTGGCTATGAAAGACAGTGAGAACGAACTACGGGAAATTTTACGAGAAGTTAGTTCCCAAATAGCCGAGAAAGGAATCCAAAACAGATACTATTGCCTTCCCACAAGAAATACACACACTGCCGTTTTGGCACGAACGTTCACCTCATATTTATCATTGCTTGAGCAAACTCGTCTGGACAAACTTTATGAACATTTGGTTGATGAAGTAACTGAATGGATCTCAAAACTATTTAATTTTGATAACAGTCTTGCATATTATCATCAACATTGCTGGAGTGGTGTTGTGAAAGTGTGCAGACTTGCTTTGCGTATGAAATATCCCAAATATGCGACAGATGGAttcactgcactctatacaagGCCACCAGTTATCTACATAAGCGCTGCCGCCCATCCATCTTTTGGTGGATACTTACGAATGGAGCTTGGTCTTCCACAGTCGAGCATCTGTGAAGTTCCTTGCAATACAATGTTCGGTTCGACGCACTCAATGGATATCGCTGCGTTCGAGCGTTTATTAAGTGATGATATTTCGTGTGGGAAAACGCCCTTATTGGTCGTGGCTCATGCAGGAACTCCACTTGTTGGCCACACAGACAATCTGCAAAGACTACGCGAGTTGTCCACACAGAACGGGCTTTGGTTGCACGTGATTGGGGACACCCTGGCAACACTCTCTTTGGCGTCTGTACCATCGTCGATGACACCAGCGCTCAGCAGTGACAGTGTCACTTTAATATTACATCGTTGGTTCGCGATGCCGTCCGCCCATTGTTGCACGTTATACAGAGCCAAAGATCCCGGCCAGGCGGCACAAGCTGGTCTAGGTTGTACAGAACAAGATGTTGAAACATTGATTCTGCCGCTCTGGATATCTTTGAAACACATTGGAATGGAAAACCTTCGAAATTCTGTTGTTAAGGCTGGGGAATTGGCGCAACATATGTGTCATTTACTTGATCTTCTTCCAAATATAAAGCGCATAGAACAAAGTCGTTGTATATCTCCTGTGGTTGTGTTTCGCTACTCAGGAGAAAGTTCCGAGTCTGAAAGTTCCGAAGGCACGAACAGCAGCGACGAAGGTGACGACGAGTCGTCAGGCGACAAAAATGCATCAGCTAAACGAAAACCCGATAAAGAAAAGGCATCGAATGCTCTGATTGACTCTTTTAATAAAATGTTGGTTTCGTCTTTGGCTAAGGAAGCCGTTCATGTCAGTATTGATCTTATTCGTGTCGCTAATGTTGGTTGGTGTCTTCGTTTTAATCCTCTGGTCACCGCTGAAAccTCGGTGACAACAAATGATTCTGTCGATCATTTCATAAAATGTCTTGAAACAAAAATTAGTGCATTTGACGCGACGCTTTCCGATAGAGTTGGTTTACTGACTGCTCTCACTCATAAACCGCACGTGATCTTAGTGGATATTCCTGATTTCCCCGGAGTTGGCGCTGTACAATTTATCCCACAATACTGGAAAAGCAAAGATCTGAGGGACTTACCTGTTGCCAAGCAGCAAGAATTGGACGAACTCAATTCGGATGTGTTAGCAAAGCTGGCGGACAAAAACCTTTTCTCTCAAGGCGAAACTGCCGAAGGCCGTGTGTGTATAAAGATTGGACTGGTTAACAGAACCGTGAGTGTGCAAGAGATTGTGGAACTGTTAGAAAAGACAGTCAAAGAAGTACAAGAATCTGCTAAGTTCGTGGAAAAGATGGCTGAAGTCATTAGGAAAGGAATCGAAGCGGCTGAACACGATTTAGTTCAAGACTCTAACGATATCCTGCTGGAAGAAGGTCTCCTGCGTCAAGTTCCAATCGTTTCCTCTGTCTACAACTGGTTTTCTCCAATGCAAcatgaaagaaaaattaaaggAAGAACGTTCGACCTTTCGTCTGGGTCACTTCACACCACAGAGAAAACGTATAAATACCACATGCAAGTACAAGAAGGGGAAGAAGCTACCGGTTAG

Transcript

BRAKERXEIT00000053791

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q66HY8	Pyridoxal-dependent decarboxylase domain-containing protein 1 OS=Danio rerio OX=7955 GN=pdxdc1 PE=2 SV=1
Q99K01	Pyridoxal-dependent decarboxylase domain-containing protein 1 OS=Mus musculus OX=10090 GN=Pdxdc1 PE=1 SV=2
A7MBC2	Pyridoxal-dependent decarboxylase domain-containing protein 1 OS=Bos taurus OX=9913 GN=PDXDC1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005296 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00282 all species →	Pyridoxal_deC	Pyridoxal-dependent decarboxylase conserved domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050477 all species →	Family	Group II Amino Acid Decarboxylases	Interproscan
IPR002129 all species →	Family	Pyridoxal phosphate-dependent decarboxylase	Interproscan
IPR015424 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR015421 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42735 all species →	-	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan
GO:0016830 all species →	Molecular Function	carbon-carbon lyase activity	Interproscan
GO:0019752 all species →	Biological Process	carboxylic acid metabolic process	Interproscan
GO:0030170 all species →	Molecular Function	pyridoxal phosphate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERXEIP00000053791.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.