Gene detail

Detailed information of BRAKERXEIP00000053869.1 in Muricea muricata

Genomic Location: chr9:13548321...13569055
NR annotation: XP_028395624.1, TATA-binding protein-associated factor 172-like isoform X2 [Dendronephthya gigantea]
Species Muricea muricata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERXEIT00000053869

ATGAAAAGTCGGAGAGTGGAGGGAGAAGAGGGGGGTGGAGTTCGAGACACTGGATCAACGCCTGTGATTCGTCGAACTGCAGCTCAGCAACTTGGGGAAGTTCAAAAACTGCACCCTCACGAACttaataatttattgaataggGTTCATGTCCATTTAAAAAGCAATAATTGGGATACAAGGATAGCTGCCGGGGAAGCGATAGAGGCTATTGCATCAAATGTGCCAAATTGGGAGCCTTCTGGTCTAGCTGTTAAATCCGAAAAGGAGAGCTCGTCGTCAGAATCATGTGCAGAGAAGAAGCAGGACATGCTGATGTTTGAGAAATTTGATATCACTCATGTTTTAAAACATGGCGAGGCATTGCTTGGTTCCTCTGGCCAAGAATATGATGTCTTTGATGAGGAACTACTGGGTCTTGATGTTAAAGAGAGGCTTGCAAGACAACAAGAACTGCTTCGAAAGCGTCTTGGTATGGTTCCTGGTCTGGAGACTGGTATGGACATCTTGCTAGAGGATGAGGACATTTTACCTTCCCATGCTGGTGCAaagaaaactttagaaaaacAAAAATCTAAAGACAGTCAGTCAACAGCAGATCTTGTTGCGGCAGAAATTGCAGCCATCAGTTCCTCAGCCGATATGAGTTCAAGACAAAAGAATGTGGCAAAAAGGAGAGCAAAGATTTTGGCCAAACAGAGATCAAAAGAAAATAGCTCTCCTGTTCCTGGAAGTTTGTCCAAAGATGAAACGGACGGCCCTCCagaaaagaaaatgaaacacaCATCGCAAGTCGTCGTCGACCAGCCTGAGGATCCAGACAAGATTGTTATTGATTCTGTCCGAGATACGACCTCGTGGATCGAGGAGGAAGTGGAATGGCCATTCACTATGTTCTGTCAGGAATTGTGCCATGAACTCTTTCATCCTTCCTGGGAGGTCCGTCATGGTGCAGCCACTGGTTTGAGACATATTGTAAGGGTTCATGGAACAGGGGCTGGCAAGAGAACAGATATGCCTAGTGACGAGATGTCCACCGCAAACGAATTATGGCTCGAAGATATGTCGTTGAAGTTATTGTGTGTATTTGCGTTGGATCGATTTGGAGATTTTGTAACAGATGAGGTCGTTGCACCAGTGCGTGAAACGTGTGCTCAGACGCTTGGTGTTGTTGTGAAACATATGAAACCGGCGGCAGTGACCAGCATCTTAAACATTTTGCTCACGCTACAAGCGCAACGTGAGTGGCAAGTGAGGCATGGAGGTCTTTTGGGCATAAAGTATTTACTGGCTGTGAGAAAGGATATGACGAGTCAGTTACTTCCGCTTGTGTTGTCTCCGTTGATTGGCGGACtcgaggacagtgatgatgacgTTAGAGCTGTATCTGCGACCGCGATGCTGCCTGTAGTTGATCAGATGCTGGGTATGAGTGAtcagATTCCTGCTATTCTATGGATACTTTGGGAGTCCCTGTGTCTTCTTGACGATCTCTCGGCATCCACCAGCAGTATTTTGATGTTGTTGGCCTCCATTGTTTCATCCTCTGGTATCCAAACAGAGGAGGCGGTCACAGGGAAACAAGGAGTGTCCTTGAGTAATGTTGTTCCCAGGCTCTGGCCGTTTCTACGTCATAATATTTTCTCTGTAAGAAAGGCGACTTTACAGACATTAAAGATTATCTTGAATACTTATAGAAAACGCTTGGATGAGACAAAACAGCAGCAGTCGTGTTGGTTGACGCCAATTCTAGAAGACGCCATGCGGcatttttttgaaagatttttagtCGAACAAGAGAAAGGATTGCTTCTCCTCCTTCATGAGGTGTGGAGAAATATGATCGAGTGTGTCCAAGGACGTCAACTTGCTCCAGTCACGTCAAAATGGATCAATATTTGGTTATCAATGGCGATGTATCCGAAATCAGCCGCGTTTAACCCGGCCTGGATCATCAGCGCTCCAGTACAACTCAAGGACGATTCAAAAAAGTCGGTGACTACAGATCATATTGGTGGTATACTGGTTGGCAAGACACCTTCTGAAGTTGAGTCAATCATTCTTCAGTCAAGGCATGCGTCAGCAAGAGCGTTGGGTTTTCTTGGCTTCTGTTTGAGTTCGACGGGCGATAATGCTTGTTTGGCTGCCTTAGACATGTTTGTTCAATGTTTACACGGAGCGCTTATGTCAACTTCAGGCGCTGCTCATATAGTGGCTGGCATGACCGTCACAGAGTGGACCTCCTTTGATAAGAGTTGCAAACATTTATCATCAATTGCTTCGAAACTAATCGAGGTTTTGACGGGACAAGTTGTCTATGACGAAGTTGGCGTCCTTTTCACCAGATTACAGTCAGATAGCCAGAGTCTTCAAATCGCTTTTCAAGAAAAGGGGATCGACACCTCTTCtgtaaatcaatcaggTTATCATACTATTGACTCTGCAACATCACTGGTTTCTGGTGTTTTTGAAGAAGCTATTAAAAGTCTTTCTTCAAAGGCAGTTGAGAGTCTTGAAAGCAAGCGCAGACATCTTGTAGCAACAATTGGTCAACTTCAGTACGAATTTGAGAAACTAAACATCAGAGTGTTATCAACGATCGCTGGTGCTCTGGTGACAATGCAGACACTTCCCCCGAAACTTAACCCAATCATTCGTCCCTTAATGGACGCAATCAAGAAAGAAGAAGACCCTGCAATGCAGcAACACGCCGCTTGCAACTTGACCCAGCTACTAGAGTTTTGTTTGCAACGAACTCCTTGCCCCAACTCGAAGATTGTCAAAAATCTATGTTCATTTGCTTGCAATGATCCTAGCGAGACCCCAGTTGTAGCGGTGAATCCCAAGACACTCTCACCAGCCAGTTCGTCCACAGAAACCAACGGTAGCACGGTCGATACTCGGTATTCGGGAATCATAACATTGGCGAAACAAAATGAAACCAAACCAACGAACTCCAATATAAAGAAAGAAAGCTCTAAAATTGCTACCGTTGCCGATGTGCAATCATCTGTTGTAAAAAACGTACAAAAAGACGACGAAAATCAAAAAAATGTGAAGCTTCAGAGAAATGGAGCTGAACTCGCGTTACGTAACATCGCAAGACATTTCCAGGAAAAACTGCCTGAGAAAATCCCAGAACTTTGGAATGTCATGATTGGTACTCTGGAGAGGAACTTGCAGAATGTCTCTGACCCTCAAGTATTGAAGGACAACGACTCTTCAGCTCAGGAAATAGTCAACAGTCTACAGTTACTAGAACTCCTGGTACCAATACTTAATAAAACATTGCAGGAAAAAGTGTTAAATCTGATCTCATCTATATTACGTTGTCTGGAGCATCCTTACAACAGCGTTCGTCATATGAGCTCCAGAGTTGTGGGAACTCTCAGTAGATTGTTCACTTCACGAGTCATGGAGATTGTGTTGGCTAAAGTCGTGCCACTTCTTAACAATGTTGATAATATTGGCGCCCGAGAAGGAGCCATTGAAGCTATTTATTATATCACAAATCGTCTGCAAGTGGACGTTATCCCATTCGTTGTCCTATTGATCATCCCGACGTTAGGAGCGATGTCCGACCACTCACAACAAGTTAGATTATTGGCCGCCCAATGTTTCGCCACCTTGATAAGTCTGATGCCTTTAGAGTCCTCGGCGAAAAAAGTCCAGCTTTCTGAAACTCTTCGTGAAAAGCGAGATGAGGAAAGGCATTTTCTCAAACAATTATTTGGTGAATCAAAACTGGACAATTTTGTCGTTCCCATTCCAATCAAGGCTGAACTGAGGAAATATCAACAGGATGGCGTTAACTGGTTGGCGTTTCTAAGGAAATATAAACTGCATGGGATTCTTTGTGATGATATGGGATTAGGTAAAACCTTGCAGACGATTTGTATCGTCGCTGGTGATCATCAAGAGAAACTCGTTGCATCTAAGGAAGGAAGCAATGTTCAAGTCTTGCCTTCTCTCGTGATCTGTCCACCAACCCTGACAGGTCATTGGTGTTATGAAGTGGAGAAATTTGTCGCTAAAGAACATCTTAATCCCCTACATTACACCGGACCTCCCGGTGAAAGATATCGgtTGAGACAAAAAGTCAAGAAACATAATCTTGTTGTTGCCTCGTACGATATTGTCAGGAATGATAGTGATTTCTTCAAGTCTCTATCGTGGAACTATGTTGTTCTAGACGAAGGACATATTATAAAGAACGCTAAGACTAAGATGTCTAAAGTCATCAAAGAACTTCGAGCCAGCCATCGTTTAATTCTTTCTGGAACACCTATCCAGAACAACGTATTGGAACTGTGGTCTCTATTTGACTTTCTCATGCCTGGTTTTCTGGGCAGCGAGAAGAAATTTCAAACGCAATATGGAAAACCGATCTTAATGAGTCGAGACGCGAAGTCTTCATCGAAGGAACAAGAGGAAGGGGCGTTAGCAATGGAAGCACTTCATCGTCAGGTTCTACCCTTTCTCTTAAGAAGAATGAAGGAGGATGTCTTGCAAGATTTACCACCGAAGATAATCCAAGATTATTACTGTGAATTATCCCCCTTGCAGCTTCAGCTCTACGAAGATTTCGCCAAGACGAAAGCGAAGCAGGACATGGAGAACAGCTTGACAGAAGATGGCGAGAGAAAAGAGAAGAAGAAAGGACCACCGCATGTGTTTCAGGCTCTTCAATACTTACGAAAAGTTTGCAACCATCCAGCCTTGGTACTTACGCCATCTCATCCGGAATATCAACGTATGACGGCTCTGTTAAAACAACAATCAACATCTCTCCATGATATCAATAACGCCAGCAAGCTGGTCGCTTTGAAACAACTTCTTCAAGACTGTGGTGTTGGAGTACTTCAAACGTCAGACGGCGTCACCGACCCAATAGTCTCTCAACATCGGGTGCTGTTATTCTGTCAGTTCAAGAGCATGCTGGATATTATTGAGAAAGACTTATTCAAAAACAACATGCCAACTGTCACGTATCTTCGTCTGGATGGCAGTACACCGGCTGGTCAGAGGCATTCTCTTGTGCAAAGATTTAACGACGACCCATCAATAGATGTACTGCTGTTGACAACTCACGTTGGGGGCTTGGGGTTGAATCTGACCGGGGCTGATACGGTCATCTTCGTGGAACATGACTGGAACCCAATGAAAGACGCACAAGCGATGGACAGAGCTCATCGTATTGGACAGAAGAAAGTTGTCAATGTTTACAGACTGATAACGAGAGGGACTTTAGAGGAAAAAATTATGGGGCTACagaaattcaaattaaacattgCTAATACAGTGATCACACAAGAAAACTCCAGTTTCGCAGCGATGGACACATCTCAGGTGCTCGACTTGTTTACAGTCGAGaataaaaaagagaaaaagacAGCGGCTAATAAGCCAACTTCAAACAAAGCATCAATGTCGGAGGTTTTAGAGAACTTGGGCGAACTATGGGAGCAGGAGCAATATGAACAAGAATATGATTTGAATAGTTTTATGGATAAACTTGCATCATAA

Transcript

BRAKERXEIT00000053869

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O14981	TATA-binding protein-associated factor 172 OS=Homo sapiens OX=9606 GN=BTAF1 PE=1 SV=2
B0XPE7	TATA-binding protein-associated factor mot1 OS=Aspergillus fumigatus (strain CBS 144.89 / FGSC A1163 / CEA10) OX=451804 GN=mot1 PE=1 SV=1
Q4WJI7	TATA-binding protein-associated factor mot1 OS=Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293) OX=330879 GN=mot1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002282 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00176 all species →	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF12054 all species →	DUF3535	Domain of unknown function (DUF3535)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR000330 all species →	Domain	SNF2, N-terminal	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR044078 all species →	Domain	Mot1, ATP-binding domain	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR038718 all species →	Homologous_superfamily	SNF2-like, N-terminal domain superfamily	Interproscan
IPR044972 all species →	Family	TATA-binding protein-associated factor Mot1	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR022707 all species →	Domain	Mot1, central domain	Interproscan
IPR049730 all species →	Domain	SNF2/RAD5-like, C-terminal helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR36498 all species →	TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0140658 all species →	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0017025 all species →	Molecular Function	TBP-class protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15192	BTAF1, MOT1; TATA-binding protein-associated factor	EC:5.6.2.-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Muricea muricata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Muricea muricata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →