Detailed information of BRAKERXEIP00000054221.1 in Muricea muricata

Genomic Location: chr9:2743927...2747397
NR annotation: CAB4021313.1, TNF receptor-associated factor 3-like [Paramuricea clavata]
Species Muricea muricata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q60803TNF receptor-associated factor 3 OS=Mus musculus OX=10090 GN=Traf3 PE=1 SV=2
Q13114TNF receptor-associated factor 3 OS=Homo sapiens OX=9606 GN=TRAF3 PE=1 SV=2
P39429TNF receptor-associated factor 2 OS=Mus musculus OX=10090 GN=Traf2 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000127 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF21363
all species →		TRAF3_RINGTNF receptor-associated factor 2/3/5, RING domainDomainInterproscan
PF02176
all species →		zf-TRAFTRAF-type zinc fingerFamilyInterproscan
PF21355
all species →		TRAF-mep_MATHTRAF/meprin, MATH domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR012227
all species →		FamilyTNF receptor-associated factor TRAF, metazoaInterproscan
IPR001293
all species →		DomainZinc finger, TRAF-typeInterproscan
IPR049440
all species →		DomainTNF receptor-associated factor 3/5, RING domainInterproscan
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR002083
all species →		DomainMATH/TRAF domainInterproscan
IPR049342
all species →		DomainTRAF1-6/MEP1A/B-like, MATH domainInterproscan
IPR001841
all species →		DomainZinc finger, RING-typeInterproscan
IPR017907
all species →		Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR008974
all species →		Homologous_superfamilyTRAF-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10131
all species →		TNF RECEPTOR ASSOCIATED FACTORInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0007165
all species →		Biological Processsignal transductionInterproscan
GO:0008270
all species →		Molecular Functionzinc ion bindingInterproscan
GO:0042981
all species →		Biological Processregulation of apoptotic processInterproscan
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for BRAKERXEIP00000054221.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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