Gene detail

Detailed information of BRAKERYMEP00000001413.1 in Astreopora myriophthalma

Genomic Location: :...
NR annotation: XP_044175385.1, glutamate receptor 2-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERYMET00000001413

ATGCATAAAGAAGATGAGATGATCCAGTGCCAGAAAGTACAGGGACTTAAAGTTCACGATTTCGAGAATCAAGACCATCTCAGATGCATAGCTCAGGAACTGATCCCCTACAGAGGTGACGTAGAAGTCGGTATATTAATTGGAACCAACTGTCCTAAGGCCATCAAGCCGCGTGAAGTGATACCGGGACGAGACGATGACCCATATGGTATCAGAACCGACCTTGGTTGGGGCATCGTGGGAAGAGTGTGCAAATCTCCATCAGATCATGTGGAAGAATCATCTCGCAGTTGGACTAACAAGATCATTACAAAAGAAGATGCAAGCTTTGCCGTAGAGTGCCGAGCAAAGGAAATCATAAGTCCTGCCTGTGTAAACCAGATGTTTGAGAGAGACTTTCATGAGACAACTGACAAAAGGAATACTCGAACGCTGTCATTAGAGGATCGTCAATTCCTGGACATCCTGACCAAAGGAATACACCAGAGAAGTGATGGGCACTATGAAATGCCATTACCACTACGGTCGGAAGATATAAAGCTGCCAAACAATCGATCCCAAGCTCTCAGAAGATTGTCTCTGTTAAAAGCAAGATTCAAGAGAGATCCAAAGTACCATAAAGATTATGCTGAGTTCATGGGGGATATGATAGCCCATTGCGCTGAGAAGGCACCTTTGGATGACGACATAAGCACCAAGACTTCAAATGGACGGCGCCATGTACAAAGGACCTTCACTGAACAAGAACTTGTTACAGGGGCCAGATACGACAAACAGCCTGATGGGCGTTCTCTGCCGTTTTCGGCAAGAAGCAGTTGTCTTGTCTTGACCTGTGACGTGAAAGGGATGTTCCACCAGTTCTATGTTAACGAAGAATACAGAGACCTGCTCAGATTCTTTTGGTGGGATCAAGGAGATTTGAAGAATGAAGccgaagaatatcgtatgaagGTACACGTATTTGGCACGGCATCATCTCCAGGTTGTGCAAATTATGGCTTCAAGAAGGCTGCTGATGACGGAGAGAAGGAATTTGGTACCAGCGCTGCTGATTTTATGCGAAGAGATGTTTATGTCGATGACGGGCTTAAGTCAGTTAAAGATGTGAGTACTGCCTTCAATCTTATTCAGAAAACTCAAGACATCTGTGCAAGGGCTGGCCTGAGATTACACAAGTTTAGCAGCAACAAGAAGAAAGTTATTCAAGCCGTCGCTCCCGAAGACCGTGCAAAGGGGCTACAAGGCCTCGATCTGACTAGAGATCCCTTACCGATCGAGAGAACCCTTGGCATCATATGGAGAACCGAAAATGACGCCGACTGGGATGACCCAATAAATGATGAGCTAAGACCAAGATGGGAGCGATGGAGGAACGAGTTGCGTACCCTGGAACGGCTAAGGATTTCAAGTTGTTACGGGCCAGAAACATTCGGCGCAGCTAAGGTAATGGAATTGCATTACTTCTCAGATGCGAGTCAATCAGGCTATGGTCAGTGCAGCTACCTGTGTCTGgtgaatgaaaacaatcaaTCCCACTGCTCCCCAGTTATGAGTAAACTGAGCTCGTGTTATACCATTGAAACCTGTGACAGTTCACCGCCTAGATCTGACAGCCGCGGTGGTCGCCGTCAAGGATCATTGGGAAGCGTAACAAAGAATTTGGATAAGTGGTTGGAAAAGCTGGACATCAAAATCAGTAGTTCATTACTCCACAAAACTACGTTAGTGCATGGGAACAGCAGGGATTCTGCGGAAAGTATTAGATTCCTAGAGCAAGGAGATAGACTCCAAGGGAGCTCTGGTCATGGGACTCGCTCCCTTAGGAAGTATATCGGTCAGTATAAGATTAACCAGTGCATAGAGCAAGagGCCAACGCTGGAAGAATTTATGACGCCGTCTTTACTATTGCTAAGGCCATTACGCCGTTACTGGCTGAGAATAGATCATTTACATTGCCACCCGTCACGAATGGATTATGCTCGTCTTTCAAAAATCACGTTGAACCCTGGATTGACGGAAATAGTTTTGTGGACGAACTGAAAAAAgtcGACACCCAGGGAATTATGAGCAATATCAGTTTCGGGAGATCGGGATCACCAACATCCACTATATATGAGGTAGTAAATTACCAACGCGATGAAGGATGGGTCAAGGTGGGAGAATACAACCATCATGTCGGAGATcctttgaaaatgaaaagaaaaagaccaaTTGTGTGGCTTGATGGTACACTAAATACTCCTAAGCTGGCGAGCCTCGAGCTCAAGTACATGAAGATCAAAGTGCTTATAGCTTTGAGCCCTCCATTtgtaatgaaaaaagaaaactcaagtGACTCAGATGGTGGAGTGGATTATGAGGGTTTCTGTATCGACCTTTTAAATGCGCTGAGAGGAAAGCTTCAGTTTGAGTACGAACTGCAACTCAGACAAGAATTTGGGGAGAAGCAACCCGATGGCTCGTGGAGTGGAATGATCGGAGAACTAACCAGGAAGAAAGCAACTTTGGCAGTCTCTACGTTAACAATCAGCCCTGAACGAGAAAAAGCCGTAGATTTCACACAGCCTTACTTTAGCCTTGGCTTCAAAATCATTATGAAAAAGACAGATTTAGAAGACAAGGTAAATACGTGGGGATTCCTAGATCCTTTTGAGAAGACTCTTTGGATGGCTATCATTGGCTCGTCCGTCATTGTTGGCATTGTTGTGTGGGTGTACGACCGTTTAAGCCCGTTTGGCTTCTATGGAAGAGTTCTGCAATCAGTGCAGGTAACAAGTGAGGAACTGCACGCACAAAATACGTTGTCATTTCTTAATTCCCTCTGGGCAGCGGCTACGTCTTATATTGAGCAGGGACCCGATGGACGGCATCCTATTTCTCACTCGGGAAGAGCGACAATATTAGCGTGGTGGTTTGCTATCTCTATATTTGGTGCCACATACACAGCAAACTTGGTCGCTTTTTTGACTATCAACAAATACGATTCTCCAATCAAAACAGTCGAGGATCTAGCCAATCAGGACAAGATAAAATTTGGAACTGTTAATGGCAGTCAGCTTGCTGAAATGCTCCGATCTGCCTCGCTCCCAGTTTACGAGAGGCTATGGAAATTTATCATTATGGAACCGAATGCTACTTATGCCATTGAAAAAGTgcgaaaaacagaaaattacGCTTTTATTTGGTATTCTGCTGTACTGGAATACGAAGCCCAGCGTGAACCATGCAACACCTTGAAACTGGTTGAAAGACCTTTTGGCAACATCAATTACGGATTCGCACTGCCTCGCAACTCGCCATATACTCACAACTTCAGCGTTGCAATGTTAGAGCTTCAACAAGAAGGCTTCTTGGAGCGCATGAATGAAAAGTGGTTTAGAAGCCGCAGCGATTGCAGTGCTGAGACACAGGCAGCTCAGGCAACAGCTACGGAAGGCGGTGATCGGTTACAGTTCAATGACATGGCTGGAGTGTTCATCACGCTTGCTGTTGGTGTGGCCGTCGGGATGGTTGTCCTGTGCATTGAATTAACTTATGCATCTTACATGGACACCAGATCGAAATACGCTAAGGCACCAAAAACAACATGCGAGGCTCTGGCGAAAAGATTACATCAAACCAGGAAAAGATCATTACCACGTTTTCAGTAA

Transcript

BRAKERYMET00000001413

Protein

Uniprot

Uniprot term	Description
P34299	Glutamate receptor 1 OS=Caenorhabditis elegans OX=6239 GN=glr-1 PE=1 SV=2
Q61625	Glutamate receptor ionotropic, delta-2 OS=Mus musculus OX=10090 GN=Grid2 PE=1 SV=1
Q63226	Glutamate receptor ionotropic, delta-2 OS=Rattus norvegicus OX=10116 GN=Grid2 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00060	Lig_chan	Ligand-gated ion channel	Family	Interproscan
PF05380	Peptidase_A17	Pao retrotransposon peptidase	Family	Interproscan
PF01094	ANF_receptor	Receptor family ligand binding region	Family	Interproscan
PF10613	Lig_chan-Glu_bd	Ligated ion channel L-glutamate- and glycine-binding site	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001320	Domain	Ionotropic glutamate receptor, C-terminal	Interproscan
IPR028082	Homologous_superfamily	Periplasmic binding protein-like I	Interproscan
IPR001508	Family	Ionotropic glutamate receptor, metazoa	Interproscan
IPR008042	Family	Retrotransposon, Pao	Interproscan
IPR019594	Domain	Ionotropic glutamate receptor, L-glutamate and glycine-binding domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR001828	Domain	Receptor, ligand binding region	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47331	PHD-TYPE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0015276	Molecular Function	ligand-gated monoatomic ion channel activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0005216	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0006811	Biological Process	monoatomic ion transport	Interproscan
GO:0038023	Molecular Function	signaling receptor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K05313	GRIN; glutamate receptor, ionotropic, invertebrate	-	Ion channels	ko04040	deepkoala