Gene detail

Detailed information of BRAKERYMEP00000001512.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_029205630.2, sorbin and SH3 domain-containing protein 1-like isoform X2 [Acropora millepora]
Species abbreviation AMYRI · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000001512

ATGGCGTCCTCTGAAGTGTATGAAGTTGTGTTGAGCGGTGGAGCGCCGTGGGGCTTTAGATTACATGGAGGAAAAGAATTTAGAGCACCTTTGAGGATTGCTAAGGTGACACCCAGCAGCAAAGCTGAAAAAGCGGGAATTGCAGAAGGATTGCTTGTTCGGTCAATCAACGATGCTAGCTGTGAAGACTGGACACACAGTGATGCACTCAATAGCATCAAAAGGACTGGATCCATGCTTAAACTTGTCCTTTCTAgAAGGGGGCCTTCCAATTCACCAGAACTTGTTCCAAGCAGTAGCTTCTTTTCACCATCAGCCTCATATACAACAGATAACATAAAAGATGGCAACATCACTCACGTTTCAAAGGCTTCTTTCAAGCCATCATCATCTAGTAATTCACTGTCTTATGCTACGATGCCCAGAGGAACTGAAAAAAGAGATGGGAGATGGAACGacattgaagaaaacaataatgtTGACTCTTTTGCTTCCAGGAAAGtaGATTTATCAAACTCTAATGAGTGGAATCCTGACATTATATCTGGGGTGGTACGACCACCGGAGCAAATTAAACTAGTGCATGATATGGAGGCAATTAGATCTGTTTCAAGctcatcatcatcttcagAGCCCAACGTGCATGTTAGAGCTCCTTCAGATACTCGAGGGTTTGTTGATAAACCAAGACCCATTGGACGAGGAGGGAGGAGgttgaCATCTGGTTCAATTGGCTCAGAAGAAGAATTCAACATGGCAAATGGTGATGCTAGTAGCTCAGACTCTGCACCTTCAGTTACTCACAGACCAGCTTTGCAGCAATTCAGACGACAAAAAGAACAGGCTGCTTTTGAAGCCACAAAGGAACCGAAACCAATCCGATCAGTGGCACCTCCAACACAGTCCAAGGCCCAAAAATACAATGAGGAGTACAAGATAAATGAACCAAGCGACTCTCCTGGACCACACAGACCATCAATTCAAAGAGGAGGAAAGTGGTATAAAGAAATGTTCAAAGAACTCCACTCTAGTGCAGGAACTTCCTCCAATCTTTCGGGACTACTCGCTAGTGACGTTGCCAGGGGAACCGTCAGAGATCGTGAAAGCACAGGATCCTTAACTCCTCCGAGAAGTGCATCACCGCCTCCCGACTACAGAGACAATGAAGTATTTTCGAACAAAGTGGATTATGAAGCAGTTAGGAACACGAGTAATGTTTCGTCAGAATCTAGTCGACCCAGCTGGTCAAGTTCCGATAGTGAAAGGCATGGCTTTGAAAAGAGACCATCACGGGCGAGCGCCAGTCATGTGCCAGCGTGGTATAAAGACATGCAGAAGGGGGTTGAGGTGCCTGTGCAAAAGATAGAAGAACCAGAGTCGTATATCGTACAAAAGAGACCGGTTTACGGGAACATGGGAGAAGAGAGGAGATTCCAGGAGCCACAACTTTCTGTAGCACCTTTCGCAATTAATTCTTCACCGCCGTCAACTTATGTCGACCAAAGGAGATCTCCTGCGTCCGTGACAGTTCAAATGGAAGAGAAATATCTACCACCAAGCGCAACAAGCCTGTACGAGAGTCGCTTTCAAAGAAGACAGGTAGCTTATAACAACCTTGGTGGGAACATGGGGGAAGAGAGGAGATTCCAGGAGCCACAACTTTCTGTAGCACCTTTCGCAATTAATTCTTCACCGCCGTCAACTTATGTCGACCAAAGGAGATCTCCTGCGTCCGTGACAGTTCAAATGGAAGAGAAATATCTACCACCAAGCGCAACAAGCCTGTACGAGAGTCGCTTTCAAAGAAGACAGGGTCCAACGAGGACAGCTTCGGAGGAGCTGCAAGTCAGACAGCAGCCGCCATCTGACGAAGATGTGCTTAGACGACGAGAGGAGGAAGCAGCGCGTAGACGGagggaagaagaagaacagagacggagagaggaagaagaaagaaggagggaagaagaggaggagctGATGAGAAGgagagaggaagaagaggaacgATTAAGGCGGGAATATGAGACTGAGGTGGCCAGGAggtggagagaggaagaagAACGAGCCAGGAGAGAAGCCAGTAAACCACAATTCATTGCAAGAGCCTTGTACAGTTTCAACGGTCAAACTGAAAAGGAGCTGTCCTTCAGAAAAGGTGATATCATCAATGTCAGGAGACAAGTGGATAAGAACTGGATAGATGGCGAACTCAATGGCAGACGAGGAATCTTCCCCACTAATTACGTTGAGGTTCGTCCAGTCGATGAAGACGACGAAGCAccatccccccctcccccggcgACACAAAAGACGGCTCCCCGCGTCCAAGTGATACTAGAACAGCCTTCTTTGCCGCCCCCGCAGCAACGGCAGGTAGTGTCCTATTCTCAGCCACCTCAGACACCCCAGGCTCAGAAGATCTCACCGCGTCCCGTGGCTCAAGAAGCAGCGCAAACTGCGAATATCGAGGGTGAAGCGAGAGTTCGATACAGCTTCAAGGCCGAGACGCACAGAGAACTGCCATGCAATAAGGGAGATATCATCGCCTTAGTGCGCAAAGTAGACAACAATTGGTACGAGGGACGGGTAGGTGACAGGAAGGGAATTGTACCTTCAAGTTACTTAGAGGTTTACAGGGAACCTGAGGTGAAAGTTGTTCGCCAGGAAGAAGTGCAACCCGTTCAGTCAGTCCGTGTGGAGCAGgCTCCAGATTACGTAAGAACAGACTACAACTACAACCAGAGACTGCACCAACAGCCGAGAGGTCCCCCCGGTGTTGTACAGGCAGGCCAGGCTACTACCACAGCAACACAAGTCATGTATATCGACGAACCAATTGAGCCTCGTTTTGGGTTAGGGCCAGAAGGAGAAGTCGTCGCTCATGCAGTTATTGATGAACCAAGGATAGGACACGAACAGGGAGAAAGGTATCGTGCGATGTTCAGTTATGAACCGGTGAACGAAGACGAGCTTCGCCTCGAAGAAGGAGAGGAAGTGATTGTGCTGGAGAAATGTGATGATGGGTGGTTTGTGGGCACCTCTGCTCGCACCAATTTATTTGGAACGTTTCCTGGGAATTATGTTGAAAGAGTGGCCAGCCCGAGAATGGTCCAGATTGTTTCAGTTCTAACTAGCCTTTGTCAACTATTTGTGGTTGTACATACGGCTGCTTCGCCCGGGAGTGCTCAAGCCGCAAACTACGGTGTTGCAAGTAATGCACCTTGTGGAAGCAGCCGGTCCATCATTGGCGCGGCCCTAAAGCGACATGTTTTCCTGACTCTGCGGGTTCCCAGCCCCCTTCACTGTCTAAAGGCGTGTAATAACGACATCAAGTGTCAAAGCATTAATCACTTGATGGGAAAAGACATTTGCGAACTGAATAATCGCACGAAAGAGGCAAGACCTGAAGATTTTATCGCGGACAGTACTAAGTTGTATATGAAAAGGCCTCTAAACAGAGTCCCCCTTGCTTCCATTCCCGAGCTGCCTGCCGAGACATGCGATGAAATAAAAGCGAGTGAAGAGGGACAAGCGGTCAGCGGCAAATACTGGCTGTCATCGCTGATACCAGGAACATCTCTACTTGCTTCCTGTGACATGGAGACGGGAGGCATATTTTgcgatgcaaaactaaagagcAACAGCGTAGCGAGAGATGGCAAACATTGGGTATCCGGGGCGTCCTCCAGCGCATTTCAGGTGTATTGCGACATGACAGCTACTGGCCAAGGTTGGACTCTCATCGCTCGATTCTCCAACTATGACAGGAAAAACTGGATGGAAACAAAAAGAGCTGGGGAATGGTGGTATCACAAGACGGTCAGTGCTGGACAAACGACCCATCCATCGTCCAACACTGACATGATCTCGCCAGCATTCTGGTTGGCCAGCGGTAAGGAATTCAAGATCACGCGCAGTGACGACCCTCGGCATACCGCTCTCTTGCAGACCACTGGTAACTGTTTGAGGGGGCGAACATTCAGGTCCAAAATCACCAGTTACGGAGACTTCACAGATGGCGGCTCGTGGGCATCCGACCGATGCTTGGGACATTGCACCGTTCAATACGGCGGCCGGTATAAAACAACGGACGGCTTTGAACAAGCTAATTGCAATGGCAACATTCAAAACGCAAGACAGATCGGCTTCTGGTGTGACTGGAGTAGCGGTGATGGAGCCGTGCTGATGATTGGCGGTGGAGGGTCTAATTGTCAACGAGCGGATCACGGTATCGGAATTACAGAAGCTAATGAAGCTGGCTTTGATGAAAAAGGAACCCCGGAACATGATTTTGGCAGTGACGGTTCTAACGACAGGACATACTCGTTAAATCTGTGGATACGTTAA

Transcript

BRAKERYMET00000001512

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O60504	Vinexin OS=Homo sapiens OX=9606 GN=SORBS3 PE=1 SV=2
Q9R1Z8	Vinexin OS=Mus musculus OX=10090 GN=Sorbs3 PE=1 SV=1
Q3UTJ2	Sorbin and SH3 domain-containing protein 2 OS=Mus musculus OX=10090 GN=Sorbs2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002141 (this species only)
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00024 all species →	PAN_1	PAN domain	Domain	Interproscan
PF14604 all species →	SH3_9	Variant SH3 domain	Domain	Interproscan
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan
PF00018 all species →	SH3_1	SH3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR050384 all species →	Family	Endophilin/SH3RF	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR003609 all species →	Domain	PAN/Apple domain	Interproscan
IPR036056 all species →	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14167 all species →	SH3 DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERYMEP00000001512.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.