Gene detail

Detailed information of BRAKERYMEP00000001561.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_029205924.2, NPC intracellular cholesterol transporter 1-like isoform X1 [Acropora millepora]
Species Astreopora myriophthalma · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000001561

ATGAGGAGATTGTATTGCGAGATGACGTGCGACAGGGATCAGTCACTCTTCTTGGACCCCACTCTAGTTGTAAATATTACAAACCAGTTAACCATTTTCAGCGTTAATTACTATGTATCAGAGAGATTCAAGCAAGGTTTGTATAACTCCTGCAAAGATGTCTCATTTCCCGGAAACAATGAGAAGATATTGAATCTATTGTGTGGAAGACCTGCCGAAAATTGTAATGCACAAGATTTGCTCGATTACATGGGAAGTACCTTAAATGGCTATACTCCGTTCAGCATTTCTTTTCCAACAAAACTTGCTCAAAACCTTCACTGGATGGACAAGAAAATCTTTCCATGTAATGAGTCATTCATTGATCCTCAGAGTAACCAGACAGCTGTGCGGTGTAGTTGTCAGGACTGTGTAGCCTCTTGCCCAGTTCACCCTACAATGCCACCAGAaccaaagaaggaaaaaattttGGGACTTGATGTTCTTTCATTTAGTCTCCTCATTTTCTACTTAGCATTCCTAGTAATCTTCATCCCAAGCAGCATCATTTACTCATTAATGCAAAAGAACAAGCAAAGGTATGCTTTGGTAACTGGCAGTACTCAGTCAAATGAAGAAGTCTACCCTCCTGTTTTGAACTCGGTGTCTTTGTTGGTAAACTCACGTGTGGGAGTGTGTGAACGCTTGGGAAACAAGCTAGAGTCAGCACTGTGTTATTGGTTTACAAGATGGGGAGTTTGGTGTAGCAGCCATCCATTTGTGGTACTGGCAAGTTGTTTTCTCATCGTTGCTGCTCTAGCATGTGGTCTTGTGTACTTCACGGTAACTACGGACCCTGTGGAATTATGGTCATCACCTACTAGTGAAGCACATCGTGAGAAAGAACTTTATGATTCCAAGTTTGGTCCCTTCTATCGCACTGAGCAGCTTATCATTCGTCCAACGTATTCTGTTCCCGGGGGTTACAAACGTTATCCCGATAAAAAATGGATTCCATTTGGACCAATATTTCATCTTCATTTATTGCGCCAGgCTCTTGACCTTCAGAATGAGATCACTAATATGCAAGTGCCATTTGGTTCTGGTAACATCACGCTGGAAGACATCTGTTTCCAGCCTTTGGCACCGCAAAAACAGCAGTGCACAATTCAGAGCTTCTTTCAGTACTTCCAGAATAACCGCACTACGCTGAACAAGTGTCTTACTGCCATGGGCTTAATTTGCAACAATGAGAGCTTGTCAATGGACTTCAAAGCGCACGATTTCCATTCTCATGCAATATTTTGCACAGGCTCTCCAACCTCCTATGATGGCAAGTTAAAAGTACCGTGCCTTGGTGCATACGGAGGACCAGTGGCAGCAAACATTGCTCTGGGAGGCTTCAGTGGCACTGCCTACCAAAATGCCTCTACGTTAATTATTACCTTTGTTGTCAACAATCACAAAGATAAAAGCAAGCTAGATAAAGCTCTGGCTTGGGAGAAAGCGTTTATAAAGTTCATGAAAGATTATGTGGACGACCCCAAGAACAGCAATCTGACCATTAGTTTTACTTCTGAACGATCCATACAAGATGAGATAGAAAGAGAAAGCAGTACGGATGTAATTACCATTCTTGTCAGCTACTTGATTATGTTTCTTTACATCACAGTGGCCTTGGGGCAATACACAGATTGTAGTACAATTATGATTGATTCTAAGGTCACTCTGGGAATTAGTGGCATCGCAATTGTTGCATGCTCAGTGCTGGCATCATTAGGTTTCTGGAGCTACATTGGAGAAGCAGCTACCCTTATTATCATCGAAGTTGTTCCCTTCCTGGTTTTGGCTGTTGGTGTGGACAATATTTTCATCCTTGTTCAAGCGTGTCATCGCTACCGTCCCTCGGTCAATGAGGACATCCCTCACAAAATTGGGCGTGTTCTTGGGGATGTTGCACCTAGTATGCTGTTAACCTCTTTGTCTGAATCAGTGGCTTTTGCACTGGGTGCACTGTCAAGTATGCCAGCTGTACGGATATTCTCACTGTATGCTGCAGTAGCAGTCTTCTTTGACTTCCTGCTTCAAGTTACAGCATTTGTGGCAATTCTGTCTCTTGATTCCAAACGTCAAGAAGACAACCGCTTGGATCTCTTTTGCTGCATcaaagaaccaaaaaagaaaagttctggcGACATTAATTGTAGCATGTATGTTGTCATGAAGTACTTTGCAGAGGGTTTACTTTCTGCATTTGTGCGGCCTATAGTGATCGctgtttttgttggtttgttgttCCTTAGCATTGCAGTCACTCCAAAGGTCAATGTAGGTCTTGATCAAGAGCTTGCTCTTCCAAAGGATTCCTATGTTTTGAATTGGTTCAGAGACATGAAGAACTATTTGCAAGTTGGTCCCCCTGTGTACTTTGTTGTCAATGAGAGTTTTGACTATGAACATCGCACTGGGCAAAATAAGATCTGTGGCTCTGCAGGGTGTAACCCAGATTCTCTAGTGCAGCAGATTTTTCTTGCATCTCTGAGTCCTGAACAAACCAAGATTGCTGTGACGGCATCGTCGTGGATAGACGACTACTTCAGCTGGATTGAGCCCAGTGGGGCTGACTCCTGCTGCCGTGTGAAGTATAGACGAGATCCCTTGCATAACAAAACAGTGCCTGTTGTTCCCGCTGTTTTCTGCAATGCTACAGttgtAGATCCTCTTTGCTTAACATGTTTGAATGAGAGCCAGAAGGGACAGCGGCCCACGGCAGAACAGTTTGATAAATATCTTCCATTCTATCTTCATGACAATCCAGAATCAAAATGTACCAAAGGTGGCCATGCAGCATACGGTCACGCTCTTGTGCTTGGCAGTCCTAACGACACGCATTATGTGCAAGCTTCTTACTTCATGTCATACCACACCATCCTGAAGACGTCTCCTGAGTACACTGCCGCTCTGAGGAACGCCCGGCAGATTTCTAAGGACATAACAGACACCATTGGAGCGGATGTATTTGCGTATAGTGTATTCTACGTATTCTATGAGCAATACCTGACAATTGTCAAGGACACATGGGAAAATCTTTTGTATTGTGGTGCTGCCATCTTTGTAGTCACGTTCCTTCTTCTGGGATTCAACCTAAGCATCGCCTTTATCGTCACCTTCACTGTGTCTCTCATTATCGTTAATTTGATCGGTTTGATGTACGTTTGGAACATATCACTGAATGCTGTGTCTTTGGTCAACCTCGTGATGGTATGTTGA

Transcript

BRAKERYMET00000001561

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O15118	NPC intracellular cholesterol transporter 1 OS=Homo sapiens OX=9606 GN=NPC1 PE=1 SV=2
P56941	NPC intracellular cholesterol transporter 1 OS=Sus scrofa OX=9823 GN=NPC1 PE=2 SV=1
O35604	NPC intracellular cholesterol transporter 1 OS=Mus musculus OX=10090 GN=Npc1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001652 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02460 all species →	Patched	Patched family	Family	Interproscan
PF16414 all species →	NPC1_N	Niemann-Pick C1 N terminus	Domain	Interproscan
PF12349 all species →	Sterol-sensing	Sterol-sensing domain of SREBP cleavage-activation	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003392 all species →	Family	Protein patched/dispatched	Interproscan
IPR032190 all species →	Domain	Niemann-Pick C1, N-terminal	Interproscan
IPR004765 all species →	Family	NPC1-like	Interproscan
IPR000731 all species →	Domain	Sterol-sensing domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45727 all species →	NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0015918 all species →	Biological Process	sterol transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0032934 all species →	Molecular Function	sterol binding	Interproscan
GO:0005319 all species →	Molecular Function	lipid transporter activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERYMEP00000001561.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.