Genomic Location: not available for this species
NR annotation: XP_044177789.1, protein lin-28-like isoform X2 [Acropora millepora]
Species Astreopora myriophthalma · all data for this species · gene families
| CDS |
| BRAKERYMET00000002186 |
| Transcript |
| BRAKERYMET00000002186 |
| Protein |
| BRAKERYMEP00000002186.1 |
| UniProt accession | Description |
|---|---|
| P41824 | Y-box factor homolog OS=Aplysia californica OX=6500 PE=2 SV=1 |
| P72366 | Cold shock-like protein CspA OS=Stigmatella aurantiaca (strain DW4/3-1) OX=378806 GN=cspA PE=3 SV=1 |
| P0A9Y1 | Cold shock protein CspA OS=Escherichia coli O157:H7 OX=83334 GN=cspA PE=3 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002110 (this species only) |
| Transcription factor family | CSD · all TF in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00098 all species → | zf-CCHC | Zinc knuckle | Domain | Interproscan |
| PF00313 all species → | CSD | 'Cold-shock' DNA-binding domain | Domain | Interproscan |
| PF01391 all species → | Collagen | Collagen triple helix repeat (20 copies) | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR019844 all species → | Domain | Cold-shock (CSD) domain | Interproscan |
| IPR002059 all species → | Domain | Cold-shock protein, DNA-binding | Interproscan |
| IPR001878 all species → | Domain | Zinc finger, CCHC-type | Interproscan |
| IPR008160 all species → | Repeat | Collagen triple helix repeat | Interproscan |
| IPR012340 all species → | Homologous_superfamily | Nucleic acid-binding, OB-fold | Interproscan |
| IPR050149 all species → | Family | Collagen superfamily | Interproscan |
| IPR036875 all species → | Homologous_superfamily | Zinc finger, CCHC-type superfamily | Interproscan |
| IPR011129 all species → | Domain | Cold shock domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24023 all species → | COLLAGEN ALPHA | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| GO:0005615 all species → | Cellular Component | extracellular space | Interproscan |
| GO:0031012 all species → | Cellular Component | extracellular matrix | Interproscan |
BRAKERYMEP00000002186.1.
