Detailed information of BRAKERYMEP00000003060.1 in Astreopora myriophthalma

Genomic Location: BLFK01000078.1:2249868...2252388
NR annotation: XP_020609902.1, oxygen-dependent coproporphyrinogen-III oxidase-like [Orbicella faveolata]
Species Astreopora myriophthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9V3D2Oxygen-dependent coproporphyrinogen-III oxidase OS=Drosophila melanogaster OX=7227 GN=Coprox PE=2 SV=1
Q3B7D0Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial OS=Rattus norvegicus OX=10116 GN=Cpox PE=1 SV=1
P36552Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial OS=Mus musculus OX=10090 GN=Cpox PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003795 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01218
all species →		Coprogen_oxidasCoproporphyrinogen III oxidaseFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036406
all species →		Homologous_superfamilyOxygen-dependent coproporphyrinogen III oxidase superfamilyInterproscan
IPR018375
all species →		Conserved_siteCoproporphyrinogen III oxidase, conserved siteInterproscan
IPR001260
all species →		FamilyCoproporphyrinogen III oxidase, aerobicInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10755
all species →		COPROPORPHYRINOGEN III OXIDASE, MITOCHONDRIALInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004109
all species →		Molecular Functioncoproporphyrinogen oxidase activityInterproscan
GO:0006779
all species →		Biological Processporphyrin-containing compound biosynthetic processInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0006782
all species →		Biological Processprotoporphyrinogen IX biosynthetic processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K00228CPOX, hemF; coproporphyrinogen III oxidaseEC:1.3.3.3
Porphyrin metabolismko00860deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Astreopora myriophthalma tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Astreopora myriophthalma, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix–
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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