Gene detail

Detailed information of BRAKERYMEP00000003076.1 in Astreopora myriophthalma

Genomic Location: :...
NR annotation: XP_029188693.2, squamous cell carcinoma antigen recognized by T-cells 3-like isoform X1 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERYMET00000003076

atgGCGGATGATACGAAGATGGAAGTAGTAGGAAACGATAACCAGACATTAGCTGAAGAGGAATTAGAGGGAAATATGGAAGAAGGAGGAGAAGATTCGGATTCTGATGATTCCGATGACAATGATGTGATTAGTAACCCCAGAATTCAACAACTGGAGCTTCAGGTTGCAAGTAATCCGTATCATTATGATTCTCACTTGGAACTCATTAAACTGCTCCGAGAATCTGGTGATCTTGACAAAGTTAGGGATGCCAGGGAAGGCATGAGCAAAATATTTCCACTCACACAAGAGCTTTGGTCAGAGTGGCTGAAAGATGAAATGCCCCTGGCATGCATACCAGAACATAAAGAAACAGTCATCACATTGTTTGAAAGAGCTGTTAAGGACTACCAATCCATCCAGATATGGGTTCTTTATTGTCAATTTATGATGGACATCATGGAGGGTGAAGACAGTCTTCAAGGTGTGAGATCAACTTTTGAAAAAGCCATCATTGTGGCTGGACTTCATGTTACAGAGGGGTCAGCCATATGGGATGGCTATAGAGAGTTTGAAACAGACATTTTAGAGTCTCTTGAGCAAATGGTtactgaagaaaataaagaaacagtGATGGAAAAAATTGCGGCTCAAAAGGAGAGAGTGATGTCAATTTTTAAAAGACAGCTGGCTGTACCTCTCTTAGGTATGCAGGCAACCTTGAGAGAATTTGAGGACTGGTTAGAAGATGCTGTTCCTGATGCGGTTACAATAGCTTATGACAAAGCATTGACAAAACTAGAAGAATGCCTTCCATATGAGGATACACTGGCTTCAGCACAGACACCAAAAACCACAGAGTACAAATCTTACCTAGAATATGAACTAAAGAAAGGAGATGCAGCCAGGatacagtgtttgtatgagaGAGCCATGAAGGAGAATTGTCTTGTAGGCGACATGTGGACTGAATATACATCCTATTTGGACTCCAATCTGAAAATAACATCAGTCGTAATTCCAGTTCATGAACGTGCTGTTAGAAACTGCCCATGGGTGTCCCTCCTCTGGCAGAACTACATCAGAGCACTGGAACGCACTCAACAAGACAACGGCAAAGTGAAagAGACCCTGGATACTGCTCTTGGTTGTGGTTTTTCCAGTAGTGATGATTATCTGCAGTTGTGGCACTGTTACTGTGATTACGCAAGAAGAAAGGTTGATGACTGGACGGAAGATGGTCAGCAGGTGAAGGAACTGAGGGGAACTTTTCAAATGGCAACAGAATATTTGCAAAACTATTTTGGCAAGGAGGGTGACCCCACCAATATTTTGGATCGTTACTGGGCGCGCATCGAGGCATTTCACGTGAAAAACATGACGGAATGTCAGAGAATTTGGGATAACGTGGTAATGTCCAATCATGGACGAGAAGCAGAATTCTGGCTTGAGTATGCAAATGTTTTAAGGTGTTGTCGGGACATAAAGAAGTGTCGAAAGATCCTTCAGAGAGCAGTTCAGTCCGCTAGTGATAACCCGGAAATGGTGATCCAAGCTCTTCTCAGTTTTGAGCGCGAGGAAGGGACTTTGGAAGATTGGGACGCAGCATTCTCGAGATGTCGTGTGCAGCTCTTAAGAGTCAACGAGCGAAGACAGAAGGCTGCTGAAAAAGAAAGCGCTCGTGCAAAAGCCGAAGAAGAAGCtcaagagaaaagaaaacttgcaaaTGCCGAGAGAAAAGCTGCCAAGAAAGAGGAACAGAAAAAAGCTAAGAtggaaatgaagaaaagaaagGCGTCTGACCAAGGCGTTGCTTCAAACAAGAATAACAAGCGTGAACAAAGCGATGAACATTCCGTGGAACCAGCTGCCAAGAAACCACATGtTGACAAAGAAAGCCACGCTTCTGCAACAGTACAGGAACCAGCAGCGGCAGCAAAACTCGCACGTGACAGCTCGAAAGATCCCAACACTGTATTTGTCAGCAAccttttattttcagttgatgAAGAGCGCCTGAAAGATACGTTCTCACCGCTTGGTGAAGTAACTGAAGTTCGCTTGGTGAAAAACCAGACGGGAAGATCCAAAGGATTTGCTTACGTAGAATTTAAAAACGAGTCGTCAGTTAACGCGGCCCTGTCCATGGATCGCACCAACTTAGAAGGAAGGCCGATGTTCATATCCCCGTCAGTGGATAAATCCAAAAACCCAACCCAGTTCAAGTTTCCCACGTCATTGGATAAGAAAACATTATTTGTCTCCAATCTCCCATTCAGCATCAAAGAGTCGGACTTAGAGCCTTTGTTCAAGGAGTATGGAAAAATAAAGCAGATTCGTCTAGTGAGTAACCGGGCCGGCAAACCCAAGGGATTTGGGTATATTGAGTATGAACAAGAGGCGGAGGCATCCGCCGCGATTGTAGCGCTGGATGGAACCCAGGTCGGAGACAGGCAGATCTCTGTTGCTTTGTCAAATCCCCCGAGCAGAAAAGCCAGGCAGCCTGGGACCGAAGAACAGCAGCGGCCGAAAGAGCAGCCGGGAAGCCGTGGCCGAGCTCGAACCCAGTTGCAACTCCTTCCCAGGTCTCTTCAGAAACCTGCATCCTCAGCGCCAGTCCCCTCGACAAACGGTTCGACTGCGCCGAGTGAGGAAAAGACTGCGGCTAAGAATGGCGCAGAGCCAAACCAAGGTCTTAACAATGACTATTTTAGAAGCCTTATGCAGAAGAAGAATTGA

Transcript

BRAKERYMET00000003076

Protein

Uniprot

Uniprot term	Description
Q15020	Spliceosome associated factor 3, U4/U6 recycling protein OS=Homo sapiens OX=9606 GN=SART3 PE=1 SV=1
Q5REG1	Spliceosome associated factor 3, U4/U6 recycling protein OS=Pongo abelii OX=9601 GN=SART3 PE=2 SV=2
Q9JLI8	Spliceosome associated factor 3, U4/U6 recycling protein OS=Mus musculus OX=10090 GN=Sart3 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16605	LSM_int_assoc	LSM-interacting associated unstructured	Disordered	Interproscan
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR034217	Domain	SART3, RNA recognition motif 1	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR003107	Repeat	HAT (Half-A-TPR) repeat	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR17204	PRE-MRNA PROCESSING PROTEIN PRP39-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0006396	Biological Process	RNA processing	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K22611	SART3, TIP110; squamous cell carcinoma antigen recognized by T-cells 3	-	Chromosome and associated proteins	ko03036	deepkoala