Gene detail

Detailed information of BRAKERYMEP00000003131.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_044174137.1, thrombospondin-2-like isoform X2 [Acropora millepora]
Species Astreopora myriophthalma · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000003131

ATGGATTCAGAGACAAGAGACGTTTTAGTTACAGgcaaaacagaaggaaaattTAGGAGCAAAAATAACAAGGTTTCCGCTGCGAGCCAGGGAGCAGTTCAGGTGGAGTTAGAAGAGTACAGGCCTGATGCTGTAATTTATGGCGTGAAAAAGGAGGCCTTCAGGGGCAATGATACAGAGAAGGAATTGTCTCCTGAGAAGTCTGCACAAGACAAGGAACAAGaacgcaaacaaagaaaaaggctCCTCTTTATTGCTCTTATAGCCCTTATAACCGTGGTAATTTTAGCTCTGCCAGCCATTATTCCTTTATTGCTTGGGTCCAGGACATCGTCTGTTGATTCAGGAAGTATGGATATAAGTCAGTCGACTGGAAGGGTGCTTAAGTGCGCAGCCTTGTCACATGATGTGGCAGATGGCCACCTGGTTTGCAGTGGAGTAGAGATCAATTCAACCTGCTGGACTGTTTGCATAGAAGGatatgaaaaggaaaataaacagaatggaaGTTACAAATGTCAGGAAAATGGAAAGTGGAATGGAGAGCGGACGACATGTGTAAAGACGAATTGTGGATCTCTTCACAAGGTGTCAAATGCAACGCAGGTCTGCATGGGTACAAAGTATAGGGACACTTGCGAAGTTAGCTGTAATGAGggatttgaaaagaaaaatgctcTGGCTGGGAAGTACGTTTGCCTGGAAAAGGGAAAGTGGAATGGAGAGGAAACTGTTTGTGATCGAAAAGACTGTGGATCACCACATGAAGTGCCAATCCCTGGAGAGTTTCTCAACTGTACAGGTACCAAATACCAAGATACTTGTGAAATGAAATGTCATGAATATGTTAACAAAACCATTTCCAACATATGGTGTGGTTCAGATGGGAGATGGAGTAAGCTATTTGGAGTTTGTGTTACGGCTGATCCTTGTGTCTTCTGCAACAAGTTGAATGGATCATGCATCCAGTTGCCTCAAAATCCACAAGCGTTCTGCCAGTGCAATCTGGGCTTTGCTGGAAATGGTGAACACTGTGGCCAAGATTCTGACTTGGATGGCTTTCCTGATCAGCCATTGCCTTGTAAAGGAAAGCACTGCAAGATGGACAACTGTCCGTCAATCCCTAACAGTGGGCAAGAGGATAACGATGGGGACAGTCTTGGTGACGTGTGCGAtattgatgatgacaatgacagtaTTAATGACACAAATGATAACTGTAAGTTCAAGGCCAATCTCGGCCAGCAAGATGCAGACAAAGATCTTGTTGGGGATGATTGTGATAACTGCATCACTGTTGCTAATGTTGATCAGAAAGATAGTGATAGTGATGGAACTGGAGATGCTTGTGATAGTGATCTGGATAACGATGGAGTAGAAAACAGAGACAATTGTCCTGTGGTACGTAACCCAGGCCAGGAGGACATTGATGGAGATGGTGTGGGTGATGTATGTGATAACTGCATTGAAGTGTCCAATACTCAACAGAATGATATGGATGAGAATGGTATTGGTGATGCTTGTGAAGAGAATCAAGATGAAGATTGTGATGGTGTGGGTGACAGTAAAGACAGCTGTAAAGGAATCCCTAATAGAGATCAACTTGACAGCGATGACGACAAGCTTGGAGACAGCTGTGACAGTGATAAGGATGGAGATGGCATTTTGAATACGATTGACAACTGCCCACTCGTATCAAACACAGACCAGGTGGATGCAGATTCTGATGGTATTGGTGATGTTTGTGTTGGTGACACTGATGGGGACTTAGTCTTTGATTATCAGGATGAATATCCAGTCAACAGATTTTTAAAGCAAACTGACTTCAGCCTGTACCAGGAAGTCATTTTAGATGGTGAAGGAAAAGCTCAGGCACCTCCAAAATGGAATGTTTTCGACAAAGGGAAAGAAATTGTGCAAACTGAAAATGGCAACCCTGGCCTGCTGATAAGCTACACAAAATTTGGACACACAGACTTTAGTGGAACATTCTTCATAGCTGATAAAGTAGATGATGATTTTGCCGGAATTGTCTTCGGTTACCAGAGCAATAGGAAGTTTTATGTTTGCtcctggaagaaaaaaactcaaTCATACAATCTTGACACCAGCACACCTTACCCAAGAGCTGTAGGCAGGAGAGGAATAAACCTTATGGCCATTGAATCAAGTACAGGTCCTGGTGTAAGCCTAAGAGATGCCTTGTGGGAGACAGGAAACACAATCAACCAGTCCCATGTCCTGTGGTATGACCCAAGACCTCAGTGGGCTCCAAATGTGGCCTATCGCTGGAGGCTCTTGCATGATCCAGACTCTGGAAGAATTCGTATGCGTTGGTATGAGGGAAATAAACTTTTATCTGACTCTGGGAATATAATTGACAAGAGATACAGAGGTGGTCGTCTTGGCATGTACGTCTTTTCACAGTCCAACGTTCACTATTCAGCTTTAGTTGCAGGGTCTCCTGAGATCAGAGACTATGCGCTGAGTCTGAATGGCAAAGATGCGTATGCTAATTTGGGATTTCTTAATGACATCACTGGAGAGTCTGGCAATTTCACACTGGCCGCTTGGGTATGGATAACTGGTGCAAATGGAAGAATGGTTTGCAACCTTCCACTAATCACATTTGGGGAAGGGGCCCCTGATGTTGGATTTTTGGAGCAGTCTTCAGACGATGACCTGGACTGGAAAGTGATCAGTGGTGCGACGTCAAGTGGATCGACTGGGCCATCATCTGATCATAGTACAGGCTCCGGATTTTATGCATATTTGGAGGCTTCAAGACGTTTCATAGGAGACAGGGCCTCATTTGAGACCCCTTGGTTTGTGACTGGTGATGGCTGCAATATGAGCTTCTTTTACCACATGTCAAATCGTGCAGCTGGTTCCAACATGGGGACCCTGCTTGTGGAAGTTAAAACTGTAGATAAAATGTGGTTTGGAGTGTTCTGGAAAGCTGGAGACCAAGGCAATCAGTGGAATCAAGGACATGTAGATCTTTCAGTAAGGAATATTTTTGGGGAAGGTGGGGTTAGAAGTATTGGAAAAGGGGAAGAGGTATTGGTAAGGCAAAATGGGGTCAGACTATTACTGTAA

Transcript

BRAKERYMET00000003131

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P07996	Thrombospondin-1 OS=Homo sapiens OX=9606 GN=THBS1 PE=1 SV=2
Q03350	Thrombospondin-2 OS=Mus musculus OX=10090 GN=Thbs2 PE=1 SV=2
P35441	Thrombospondin-1 OS=Mus musculus OX=10090 GN=Thbs1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004174 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00629 all species →	MAM	MAM domain, meprin/A5/mu	Domain	Interproscan
PF00084 all species →	Sushi	Sushi repeat (SCR repeat)	Domain	Interproscan
PF05735 all species →	TSP_C	Thrombospondin C-terminal region	Family	Interproscan
PF02412 all species →	TSP_3	Thrombospondin type 3 repeat	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000436 all species →	Domain	Sushi/SCR/CCP domain	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR000998 all species →	Domain	MAM domain	Interproscan
IPR028974 all species →	Homologous_superfamily	TSP type-3 repeat	Interproscan
IPR017897 all species →	Repeat	Thrombospondin, type 3 repeat	Interproscan
IPR008859 all species →	Domain	Thrombospondin, C-terminal	Interproscan
IPR035976 all species →	Homologous_superfamily	Sushi/SCR/CCP superfamily	Interproscan
IPR003367 all species →	Repeat	Thrombospondin, type 3-like repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10199 all species →	THROMBOSPONDIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0062023 all species →	Cellular Component	collagen-containing extracellular matrix	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0007155 all species →	Biological Process	cell adhesion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERYMEP00000003131.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.