Genomic Location: BLFK01000093.1:1441408...1444239
NR annotation: XP_015760996.1, PREDICTED: ras-related protein Rap-1A [Acropora digitifera]
Species Astreopora myriophthalma · all data for this species · gene families
| CDS |
| BRAKERYMET00000003238 |
| Transcript |
| BRAKERYMET00000003238 |
| Protein |
| BRAKERYMEP00000003238.1 |
| UniProt accession | Description |
|---|---|
| P62833 | Ras-related protein Rap-1A OS=Bos taurus OX=9913 GN=RAP1A PE=1 SV=1 |
| P62834 | Ras-related protein Rap-1A OS=Homo sapiens OX=9606 GN=RAP1A PE=1 SV=1 |
| P62835 | Ras-related protein Rap-1A OS=Mus musculus OX=10090 GN=Rap1a PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000309 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00071 all species → | Ras | Ras family | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR020849 all species → | Family | Small GTPase, Ras-type | Interproscan |
| IPR001806 all species → | Family | Small GTPase | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR005225 all species → | Domain | Small GTP-binding protein domain | Interproscan |
| IPR038851 all species → | Family | Ras-related protein Rap1 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24070 all species → | RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003924 all species → | Molecular Function | GTPase activity | Interproscan |
| GO:0005525 all species → | Molecular Function | GTP binding | Interproscan |
| GO:0005886 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0007165 all species → | Biological Process | signal transduction | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0019003 all species → | Molecular Function | GDP binding | Interproscan |
| GO:0032486 all species → | Biological Process | Rap protein signal transduction | Interproscan |
| GO:0071320 all species → | Biological Process | cellular response to cAMP | Interproscan |
| GO:2000301 all species → | Biological Process | negative regulation of synaptic vesicle exocytosis | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K04353 | RAP1A; Ras-related protein Rap-1A | - | GTP-binding proteins | ko04031 | deepkoala |
Genes whose expression across the transcriptome samples of Astreopora myriophthalma tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Astreopora myriophthalma, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
