Genomic Location: BLFK01000093.1:1311005...1313761
NR annotation: CAH3163702.1, unnamed protein product [Porites evermanni]
Species Astreopora myriophthalma · all data for this species · gene families
| CDS |
| BRAKERYMET00000003320 |
| Transcript |
| BRAKERYMET00000003320 |
| Protein |
| BRAKERYMEP00000003320.1 |
| UniProt accession | Description |
|---|---|
| Q8IY57 | YY1-associated factor 2 OS=Homo sapiens OX=9606 GN=YAF2 PE=1 SV=3 |
| Q99LW6 | YY1-associated factor 2 OS=Mus musculus OX=10090 GN=Yaf2 PE=1 SV=1 |
| Q8CCI5 | RING1 and YY1-binding protein OS=Mus musculus OX=10090 GN=Rybp PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006350 (this species only) · gene tree & orthology |
| Ubiquitin family | UBD|ZnF|NZF · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00641 all species → | zf-RanBP | Zn-finger in Ran binding protein and others | Domain | Interproscan |
| PF17219 all species → | YAF2_RYBP | Yaf2/RYBP C-terminal binding motif | Motif | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001876 all species → | Domain | Zinc finger, RanBP2-type | Interproscan |
| IPR039958 all species → | Family | RING1 and YY1-binding protein/YY1-associated factor 2 | Interproscan |
| IPR036443 all species → | Homologous_superfamily | Zinc finger, RanBP2-type superfamily | Interproscan |
| IPR033774 all species → | Conserved_site | Yaf2/RYBP C-terminal binding motif | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12920 all species → | RYBP AND YAF2-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0003712 all species → | Molecular Function | transcription coregulator activity | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0006355 all species → | Biological Process | regulation of DNA-templated transcription | Interproscan |
| GO:0045893 all species → | Biological Process | positive regulation of DNA-templated transcription | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K11468 | YAF2; YY1-associated factor 2 | - | Chromosome and associated proteins | ko03036 | deepkoala |
Genes whose expression across the transcriptome samples of Astreopora myriophthalma tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Astreopora myriophthalma, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
