Genomic Location: BLFK01000104.1:1443891...1451687
NR annotation: XP_029182012.2, farnesyl pyrophosphate synthase-like [Acropora millepora]
Species Astreopora myriophthalma · all data for this species · gene families
| CDS |
| BRAKERYMET00000003609 |
| Transcript |
| BRAKERYMET00000003609 |
| Protein |
| BRAKERYMEP00000003609.1 |
| UniProt accession | Description |
|---|---|
| P08836 | Farnesyl pyrophosphate synthase OS=Gallus gallus OX=9031 GN=FDPS PE=1 SV=2 |
| Q8WMY2 | Farnesyl pyrophosphate synthase OS=Bos taurus OX=9913 GN=FDPS PE=1 SV=1 |
| P14324 | Farnesyl pyrophosphate synthase OS=Homo sapiens OX=9606 GN=FDPS PE=1 SV=4 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004121 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00348 all species → | polyprenyl_synt | Polyprenyl synthetase | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR008949 all species → | Homologous_superfamily | Isoprenoid synthase domain superfamily | Interproscan |
| IPR033749 all species → | Conserved_site | Polyprenyl synthetase, conserved site | Interproscan |
| IPR039702 all species → | Family | Farnesyl pyrophosphate synthase-like | Interproscan |
| IPR000092 all species → | Family | Polyprenyl synthetase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11525 all species → | FARNESYL-PYROPHOSPHATE SYNTHETASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004161 all species → | Molecular Function | dimethylallyltranstransferase activity | Interproscan |
| GO:0004337 all species → | Molecular Function | geranyltranstransferase activity | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0008299 all species → | Biological Process | isoprenoid biosynthetic process | Interproscan |
| GO:0016765 all species → | Molecular Function | transferase activity, transferring alkyl or aryl (other than methyl) groups | Interproscan |
| GO:0045337 all species → | Biological Process | farnesyl diphosphate biosynthetic process | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00787 | FDPS; farnesyl diphosphate synthase | EC:2.5.1.1 EC:2.5.1.10 | Prenyltransferases | ko01006 | deepkoala |
Genes whose expression across the transcriptome samples of Astreopora myriophthalma tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Astreopora myriophthalma, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |