Gene detail

Detailed information of BRAKERYMEP00000003628.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_015765306.1, PREDICTED: DNA-binding protein RFX6-like [Acropora digitifera]
Species Astreopora myriophthalma · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000003628

ATGCTGgagaaaaaacagaagcaaatCGCGCAGACTCTGGGATGGCTAAGCGAAAATTACGAACTCAAAGAAGGCATGTGTCTTCCACGTTGTGTTATGTATACACACTATTTGGACTTCTGCAGAAAGGGGAAGCTCTGTCCAGCAGGTCCTGCAACTTTTGGCAAGATTATTCGGCAGCGATTTCCAAAGTTGACGACCAGGAGGCTTGGAACTCGGGGCCAATCAAAATATCATTATTATGGAATCGTCGTCAAGGAAACATCGCCTTATTTTCATGCCGGATATTCCAAGAAAGGTTTAACAAGATTTTCAGGAATGAAAGGAAAAGGAGATGTAAACGGTAATCACAAGAAGTTTTCCCTCAGCTCCAAGTCAGGCACTCTGTTACCGGAATTTCCCAACGCTACCAACGTCCATCTTCCAGAAGGAGTATCAATCCATAAGGTGGAGACTTTCATTATGATGTACCGAACACACTGCCAAAGAATGCTGGATACCGTCATTAGTGCTAACTTTGAAGGGGTTCAGACCTTCATCACTCATTTCTGGCAAGGCATGCCCAGCCACATTATATCAGTTCTAGAGTGTCCTGTTGTGGTTGATATCGTGGCCATCTGCGACTCTATCCTATACAAGGTTTTGACTGACGTGCTTATACCGTCAACAATACAAGATCTTCCAGAGAGCCTTCGAGAAGAGATAACTGATTTCGCGGACAGTTTGCTTGACTGGTTGGACGAGTCCTTGACAGAAGTACCGCTGTCTCTAAAAGAGGCCAAATTTGAAGTTGCCAGAACCTTTACACAGACGCTGAAGAGACAAGTGTGTTTTGTTCACTTGGCCCAGGCTGCACGCTCAGCATTGCTAAGTTATGAGGATGTCTCTCAGATGTTGGGAGACCTGACAAAAATCGACTTTGGTCAGATTCTGTCCAAAAGTTTCTTCATAAGTGGAAACGCTGAAGTATTTTATACAGCGAAGACATACGTTGGTGAGCTGGAGAGTCTTCTCAGTAAGCAGGCGCCATTGGAAGCGTATATAGAATGGCTGGACAGTGTGGTTGATCGATGTGTTATCAAGGAGTCAGCAGAGAATATGGCAACTTCTTTTGAAGAAAGATCGAGAAAGTTCTTAGCTATGTGGTCTTTCATTACAGCCCGTCTTCTTGCTGATTTGACGCTTAGAAGTGCACCTTGCTTTGGAGTGTTTCATTTGATCCACACCGCCTTCGAAGAGTACGTGTTTCTTGTGGTTGAAAATCAAAAGATCCTAGAAATGGACAAAAGATTGACCGCTTCACTTGAAAGCCATCTTAAAAAAGATACGCAGAACGCAGAACGCAGGCAGGAAAAACATAAGGAAACAATcagagcaaaaaaacaaaagacaagcaGGGGCCACTTACCGGTGCAAAAAGAACTCGTTGCCATTGAAAAAGTTCCTCCTCAACAACTCAAGCCAAGGTTCCACGAAAGTATTTACCCAGAAGCAGTGCAACACGTCAGTAGCTGCACGTCACAGAGTGCCGCAATCCCAAGCCCTGAAACCTACCAAACGGCCCCTCTTAACAATCCATCTCGCCAGTTTGTGCAACCGATATCTTTAAGCACTCCAGTTAATCCTCAATACTCACCAATGCAAAGCCGTCCCAATCTTCAACCGTTGCCAATGGCTGGCGTGGAGCCAACTCGAGACACAATGACTACCGTTCCAGATGTGAGCTCCTTTCAAGGTGATTTCATCAATGCCATCGACAAAGCGATTTTCAGCTCTAAGTTAACGCTGAATCTGGACGAATACATGGCTACTTCCTGGGTTCAAACTGAAACTCCTAACCTCACCGCGTTGAGCCCACTAAACATCCAAGAACATCACCCTGTGATCAATGGGGTCATGAACTTCCCAGCGAACGGGAATTATCCGATTACCTACGAAAACGTTCATCCAAACGTTTATACAAACAGCCAGCCAGCACTAGCAATTTCACGACCACAGGAAATTCCTTACATCTCTTCCAATAAAGAAGATTACGGTCCTTTTCAAAGTCTAACAAACATTTACCCAAGGTACAATGCACCAAATTACATCTACGACCCCATGCGAAATGTGGCGCAACCCGAAGGAAGTGACGTCATGACTTTCAACGGACTTCTCAATGCCCCTGCGAATTCTTATAGTATTGATGGTATGCCTCCACACGATGTACAGCTAAATCGACTAGGAGTTGGTGCCGTATAA

Transcript

BRAKERYMET00000003628

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5RJA1	DNA-binding protein RFX6 OS=Danio rerio OX=7955 GN=rfx6 PE=2 SV=2
D2HNW6	DNA-binding protein RFX6 OS=Ailuropoda melanoleuca OX=9646 GN=RFX6 PE=3 SV=2
Q8HWS3	DNA-binding protein RFX6 OS=Homo sapiens OX=9606 GN=RFX6 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000698 (this species only)
Transcription factor family	RFX · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02257 all species →	RFX_DNA_binding	RFX DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR003150 all species →	Domain	DNA-binding RFX-type winged-helix domain	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR039779 all species →	Family	RFX-like DNA-binding protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12619 all species →	RFX TRANSCRIPTION FACTOR FAMILY	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERYMEP00000003628.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.