Gene detail

Detailed information of BRAKERYMEP00000004172.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_044172898.1, uncharacterized protein LOC114960272 [Acropora millepora]
Species abbreviation AMYRI · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000004172

ATGAATTCACCACACCTGCAGCTGATTTTTCAGCTACTCGTTACATTTACGTTTTATCAAGAAAGTGACGGTCTCCTGTGCAGACGGACAGTGGATTTAGCCTTTGCAATCGACGCCTCAGGAAGTGTTGGCCGGTGGGGATACCAACAGGAACAAACGTTCATACGGAAGACCGCACAACGTTTTGGAATTTCCCAATCAGGGACACACGTAGCAGTCATAGAATACAGCACAAAGGCCACTCTTGAAATACCATTGAATCGCTACTACAGTTATCCGCGATTTTACTATGCAGTGGGGCGCCTCCCTTACACTGGAGGAATGACTCGCATAGATTTGGCGCTAAAAGTTGCAGCGGAGCAAGTGTTTGTGGCCTCGGGAGGCGCCAGGAGTAATGTTcccaaagtttttgttttgatgacAGATGGATATCAAACTCACACCGCGGATTCGACTCCGCTTGATAAGGCAGTATTGCCTCTAAGAGCTAAAGGCGTGCAAGTGTACGCCCTGGCCATAGGACCATACACCAAAGACCACGAATTAAGACTGATCGTCGACAAGAAAGAGAATATCTTTCGATCAACCAGTTTCACCGGCCTTGCAACTGTAATCAGCAAAGTAGCAACACAGACTTGCACGGAGGCTCTCCCTGTGGCGTTTGCCATTTATCCTCTGAACCAACAAGTCCGAGGAAGGGACATCAGCGCACGTCGAGCGCCCACGGCTGTTTTTAGCGGATCCGTACCAACTTCGATAGGGCCTTATGGAAGAGCTGGAGGATCATTTTATTTACAAGGAACACCCAATAGTTTCATCGAATTCCCAAATAGTGCTGGTGGAAAACTAGACACGTGGAGctcaatttcaatatttttgtggGTAAACTCTGACGGGAAACCGGGTCCGATCGTCAACTATCGCCGAGTGGGGCATGGTGTCGGCCTGTGGTTGATAGGACCGCGTGTACTGGGGGGTTACATTTACAGCCGTCATAATTTTTACCGAAGAGGAATGAATTATTATCACCTTTTGCCGAAAACGTGGTACTATGTTGGACTAACGTACGATAACGCTAAAGGAATTGCTGCCTTGTGGGTTAATGAACGAGCGGTTTCAACCACGAGGATGAGTCGCATCTATCTCGCTACCGGACGCACAATTAGAATGGGAGCCGTGACAGGCCGCATCAAACAATATTTCAGAGGCCGCGTGACGTGTCTTCAAGTATATGGGATGGCTTTAAATGCCAATCAAATAGCCAgcataaaaaagaaatgtgcaGCAAGAGATCAGAAGGATCCTTGCCTTTCCGGTCCATGCCTAAATGGCGGAAGCTGCATTGTCGCTGCGCAGGAAAAAACCGGTTACCGCTGTCGCTGTAGACCAGGATATCGTGGCCACAGATGTGAAATCAAGCCCACGCAGCCAACCGGAAGACCCACTGGGCTACCAACCACTCGACCGACGTCAGCTGGATTCAGAATAGAGATTGTAGAATACATCAACAGATTTCGAAGAATTCATGGTGCCGGACCGCTTATCCTTTCCATGCGCATTTCTATGGTCGCTCAAAACTGGGCCCAGACGCTGGTCTCTCGTGGCACTGTCTCCATAGATCCAAACACGAGCTATGGAACGAATGTCTTCGCCAGAGTGGGCTCTCAAACAGGATTGGCTCAAGTGGCTGTGGTCACGTGGTATTCATCAGTGAAATATTATGACTGGGCAAAACGGAAGTCAAAGATCCTAGCATTGccttttattcaaatgatttgGCTCTCAAGTAACTTTGTCGGCGTTGGACTCGCCAAGTCATCTTCTTCGAAGTTTTATGTTGTAGTGTACTTTAACCCCATGCCGGGGAATAAGGAACCATTACTAAAGGACAACGTCTTACCATACACAGTGACGTGCAATCCAGGCTATAAGAAATACGATGGCACATGTTACAAATATCACCCGGACAAACAGACCTGGGAAGTAGCATTATTTCAGAGTGCAAAAGAGAACGCCACTTTGGTCTCCTTCCACAAGTCACAAGAGGAAGCCTTCGTTCAGTCACTGCTACCAGCGGGATATAAAGAGATAATCTGGACAGGACTAAACGATCGGATCACGGAAGGAATCTACACATGGTCAGACGGAACCAACGTTGAATACTCAAGCTGGAAGGCAAACGAACCAACAGGAGACAAAGAGGATTGTGTCGGAGTGCAAGTGTCCAATTATGGAACTATGTCCGACGTCCCGTGTACCCAGCTTCATAACTATGTGTCAAGAAAACCACTTGAAGGTCTGATAACGTATCGCGTAAAGCTCCAATTTCCTTCCCTGCCGTGGACGGACGACTACACCCAGTTATCGTCTCTCTCGTACATGGAGCTCAAACAAAAGATAGAAACTCTGctCCTGACTATTTATAAAAACTACAGAACGTTTGTGTCAGGATACGTTGAAAACTTCAggaaaaacaaaaatcccacGACGTCAAATGCAGCAAAGAAGCCTGGATTCGCGACACCAAGCCCCGGCAGTACCGTTGCGACGGCACGGCCGACAGCCCGACCAACATCTTCTACGCTACTGACTCCAGCTTCAACCCTAACTCCAACTGGCTTGACCACCTCAAAACCTCCGGGGAAGCCGTTGGTAATAGTGTCGCTTATTCTAAAGTTTGGCCCTAACGTTGCTCCGGATCCCACAATACCAATTCAAGACTACTTGAGGAAAAACCTTGGACGACTTCCAGCACCAGTCAACCAGAAGACGCTTATTCAGTCTGTTAGAATTGTTCTTCCAGGTACTCCGCCAGCTGTATTGGGAACCTGTACTTCCAGCTGCCTCACAAATTGTTACGTCAGTTGCAATCCATTCTGTTGCAATTCAAAGATACCATCTAGTTACAACGTTCAATATTCGGGAACGCGACATGGAGTAATAGCCCAAGTAGCTCCGAACCTATTAACACCACCCAATTTGCGTTCTCAAGTTAGTATGATACCAGGACAAGTCGTAGCACAGAAGACCATCCCAATGGCATACCCAGTCACAATGCCTATAAGATGTGTACCCCACTTCCTTAGGCCGTGCCCACCTGGAACTCAAGTAACACCATTTCTGCCGCGATCTTACAACGTGCCTTCACTTACAAGTCCTTCCCGGATGTTCCAAGTGCAACCACGCCCAGTTACCCCTGTACGACAAATGATGTTACCACGACCTCCTATTGCTATGCCAAAGTATCCGTATCAGAAAGCATTTTTTCCGAGGGTGTTTCCCCAACCGATGCAGCTGCCTTGTATTCCAAGTCCATACAATCCTTGCCAACAGCCGAACAAACCTCCGGCAAAGCCTACATCTGTAATAGATTCACCACTGCACGTAATACATATTCCGCCAGCACAGCCACCGATGCAGACACCATGTATCCCTAGTCTATACCGACCATGTCCCCCACCAGTACAAACGCGTCCTTTGAAACCCATTTCTGTGATAAACTCGCCACTTCACGTAATACATCTCCCACCAGCACAACCACCCCCTACCTTCGCGCAGCCACCATGTATTCCGAGTCTATACAATCCGTGTCCACCAGCAAAAGCACCCACATTGAAACCCATTTCAGTGGTAAATTCGCCACTTCACGTAATACATCTCCCTccagcaccaccaccaccaagcTTCGCGCAGCCACCATGTATTCCGAGTGCATCTAACTCTTGTCCCCCAGCTAAAGTGCCCGCAGTCAAACCAATCTCAGTCGTTGACTCGCCACTTCATGTAATTCACCTTCCACCagcatcaccaccaccaccaccaccccctCCACCACCATTTATCTTCCCAAGGCCACAACCATATCTCTTCCCAAGACCACAATTTATTCCTGTGATGTGCATTCCTCGCCCTTACTATCCATGTCCACCAAACTATGGAGTTAGAAAGCTTTCTAAGCCCTCTCATAGGAAGGGAAGCTCTCGCGCTTTTATGCCAAAGCCAGCAGCAGGAGCCTATCAATTTCCCTACGGCCCGCAACCATATATGCAACCTCAGATTGCCACTTATGCTCCGCTTGCCCCACAGCCTATGTATCCCTCACTAATACAACAATCAGCTCAGTACGCACCTAACGTTTATGGCTTTCGACCTCCCTTTCAGGTTTACCGTCCTCCTGCATGGTCTCAGTATATTCAGAGACCTTTTGCAATGGGTCCCTGGAGTCCCATAACTCAACGCACAAATGGTCCTATGAAAACTGTACCTGCAAATGACAAGGCAAAGCAGACTCAATCCAAACCAATTCCCGCCAAGGGACCGGTTACCATAAAGGGCTCCATATTACTTTATCCTAAAAAAAGCCGAGCTAAGCCTCTTCCCCCTAAACCCGTTCCTCAGGTTCCACCTCCATGCATTCCAACTCCTATGAATCCTTGTGTTCCATTGCGTCCTTATCCGATGGCGCCAAATCCCTTTCCAGCACCTTATCCCTGCATCCCTTCTCTAGCGAACCCTTGCATTCCAGTCCTAGAAAAGCCTACAATGAAACCCGTAAGCAAAACGATTGCACTAACTTCGCCGCAATCAAAACCAATTTTGTTAACAAGACCGTTACAGGTGCAAGGGAGTGTATACATCAATCCTCGCCCAGTCCCCCTAAGAACTGCGTATCCTGGCAAACCACCTTGCGTTCCAACTGCAAACAGACCATGCAACTCATTAACACCACCTCAACGGCCTATTTTTCAACCAAGCTATGTCGCACCCGGGATCTCGAATCCCTTCTCTTCCATTATTCCTCAACAGCCTCTTAGGAACGTTGCCCCGGCCCTAACTAATCCAAGAACACGCCCACAAGCCCCAGCCCCTCCACAGTCATTTGTAGTTCAGCTTCCTGAGATTTCCCTGGTTCCAGCACCGCCATCACCACCTCCATTACCCATTCCTAACCCTCAAGCGAGCAACTGCCCAATTTCGTGTATTCTCCGCCCAGGTCCATTCTGCCCTCCATATTGTGCAGCTTTTTGTTGCAAAAAGAGAACTGGATACAAGGCgcttccaaaaaagaaaacggaacagaaaaagaaaacggaacctaaaaagaaaaacggtgccaaaaaggaaaacaagaaggAATCTAAAAGTACTAAAAAGCAAAAGACAATTCTTAAAGTAAAGAAGCCCTAA

Transcript

BRAKERYMET00000004172

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5IS41	Neurocan core protein OS=Pan troglodytes OX=9598 GN=NCAN PE=2 SV=1
O14594	Neurocan core protein OS=Homo sapiens OX=9606 GN=NCAN PE=1 SV=3
Q28343	Aggrecan core protein OS=Canis lupus familiaris OX=9615 GN=ACAN PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008086 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01390 all species →	SEA	SEA domain	Family	Interproscan
PF00188 all species →	CAP	Cysteine-rich secretory protein family	Domain	Interproscan
PF00092 all species →	VWA	von Willebrand factor type A domain	Domain	Interproscan
PF13385 all species →	Laminin_G_3	Concanavalin A-like lectin/glucanases superfamily	Domain	Interproscan
PF00008 all species →	EGF	EGF-like domain	Domain	Interproscan
PF00059 all species →	Lectin_C	Lectin C-type domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014044 all species →	Domain	CAP domain	Interproscan
IPR002035 all species →	Domain	von Willebrand factor, type A	Interproscan
IPR036465 all species →	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR036364 all species →	Homologous_superfamily	SEA domain superfamily	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR001304 all species →	Domain	C-type lectin-like	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR000082 all species →	Domain	SEA domain	Interproscan
IPR035940 all species →	Homologous_superfamily	CAP superfamily	Interproscan
IPR034113 all species →	Domain	Golgi-associated plant pathogenesis-related protein 1, SCP domain	Interproscan
IPR016186 all species →	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR016187 all species →	Homologous_superfamily	C-type lectin fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47635 all species →	CUB DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05110	EPHB1, ELK, NET; Eph receptor B1	EC:2.7.10.1	Protein kinases	ko01001	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.