Genomic Location: BLFK01000113.1:4142791...4152534
NR annotation: XP_029197368.1, actin-histidine N-methyltransferase-like isoform X1 [Acropora millepora]
Species Astreopora myriophthalma · all data for this species · gene families
| CDS |
| BRAKERYMET00000004190 |
| Transcript |
| BRAKERYMET00000004190 |
| Protein |
| BRAKERYMEP00000004190.1 |
| UniProt accession | Description |
|---|---|
| Q7SXS7 | Actin-histidine N-methyltransferase OS=Danio rerio OX=7955 GN=setd3 PE=2 SV=1 |
| B7ZUF3 | Actin-histidine N-methyltransferase OS=Xenopus tropicalis OX=8364 GN=setd3 PE=2 SV=1 |
| B0VX69 | Actin-histidine N-methyltransferase OS=Callithrix jacchus OX=9483 GN=SETD3 PE=3 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006732 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF09273 all species → | Rubis-subs-bind | Rubisco LSMT substrate-binding | Domain | Interproscan |
| PF00856 all species → | SET | SET domain | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036464 all species → | Homologous_superfamily | Rubisco LSMT, substrate-binding domain superfamily | Interproscan |
| IPR015353 all species → | Domain | Rubisco LSMT, substrate-binding domain | Interproscan |
| IPR050600 all species → | Family | SETD3/SETD6 methyltransferase | Interproscan |
| IPR025785 all species → | Family | Actin-histidine N-methyltransferase SETD3 | Interproscan |
| IPR001214 all species → | Domain | SET domain | Interproscan |
| IPR046341 all species → | Homologous_superfamily | SET domain superfamily | Interproscan |
| IPR044428 all species → | Domain | SETD3, SET domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13271 all species → | UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016279 all species → | Molecular Function | protein-lysine N-methyltransferase activity | Interproscan |
| GO:0018023 all species → | Biological Process | peptidyl-lysine trimethylation | Interproscan |
| GO:0018026 all species → | Biological Process | peptidyl-lysine monomethylation | Interproscan |
| GO:0018064 all species → | Molecular Function | protein-L-histidine N-tele-methyltransferase activity | Interproscan |
| GO:0030047 all species → | Biological Process | actin modification | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
BRAKERYMEP00000004190.1.Genes whose expression across the transcriptome samples of Astreopora myriophthalma tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Astreopora myriophthalma, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |