Genomic Location: BLFK01000116.1:251239...262719
NR annotation: XP_044182232.1, LOW QUALITY PROTEIN: laminin subunit beta-1-like [Acropora millepora]
Species Astreopora myriophthalma · all data for this species · gene families
| CDS |
| BRAKERYMET00000004417 |
| Transcript |
| BRAKERYMET00000004417 |
| Protein |
| BRAKERYMEP00000004417.1 |
| UniProt accession | Description |
|---|---|
| P15800 | Laminin subunit beta-2 OS=Rattus norvegicus OX=10116 GN=Lamb2 PE=1 SV=1 |
| Q61292 | Laminin subunit beta-2 OS=Mus musculus OX=10090 GN=Lamb2 PE=1 SV=2 |
| P55268 | Laminin subunit beta-2 OS=Homo sapiens OX=9606 GN=LAMB2 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003124 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00053 all species → | Laminin_EGF | Laminin EGF domain | Domain | Interproscan |
| PF00055 all species → | Laminin_N | Laminin N-terminal (Domain VI) | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002049 all species → | Domain | Laminin-type EGF domain | Interproscan |
| IPR008211 all species → | Domain | Laminin, N-terminal | Interproscan |
| IPR050440 all species → | Family | Laminin/Netrin Extracellular Matrix | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10574 all species → | NETRIN/LAMININ-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0009887 all species → | Biological Process | animal organ morphogenesis | Interproscan |
| GO:0009888 all species → | Biological Process | tissue development | Interproscan |
| GO:0016477 all species → | Biological Process | cell migration | Interproscan |
| GO:0034446 all species → | Biological Process | substrate adhesion-dependent cell spreading | Interproscan |
| GO:0043256 all species → | Cellular Component | laminin complex | Interproscan |
| GO:0070831 all species → | Biological Process | basement membrane assembly | Interproscan |
BRAKERYMEP00000004417.1.Genes whose expression across the transcriptome samples of Astreopora myriophthalma tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Astreopora myriophthalma, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |