Genomic Location: BLFK01000134.1:2166772...2168426
NR annotation: AIA57693.1, ferritin [Galaxea astreata]
Species Astreopora myriophthalma · all data for this species · gene families
| CDS |
| BRAKERYMET00000005210 |
| Transcript |
| BRAKERYMET00000005210 |
| Protein |
| BRAKERYMEP00000005210.1 |
| UniProt accession | Description |
|---|---|
| P42577 | Soma ferritin OS=Lymnaea stagnalis OX=6523 PE=2 SV=2 |
| P85838 | Ferritin, heavy subunit OS=Trematomus bernacchii OX=40690 PE=1 SV=1 |
| P85837 | Ferritin, heavy subunit OS=Trematomus newnesi OX=35730 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001050 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00210 all species → | Ferritin | Ferritin-like domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR009040 all species → | Domain | Ferritin-like diiron domain | Interproscan |
| IPR012347 all species → | Homologous_superfamily | Ferritin-like | Interproscan |
| IPR009078 all species → | Homologous_superfamily | Ferritin-like superfamily | Interproscan |
| IPR001519 all species → | Family | Ferritin | Interproscan |
| IPR008331 all species → | Domain | Ferritin/DPS protein domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11431 all species → | FERRITIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0006826 all species → | Biological Process | iron ion transport | Interproscan |
| GO:0006879 all species → | Biological Process | intracellular iron ion homeostasis | Interproscan |
| GO:0006880 all species → | Biological Process | intracellular sequestering of iron ion | Interproscan |
| GO:0008198 all species → | Molecular Function | ferrous iron binding | Interproscan |
| GO:0008199 all species → | Molecular Function | ferric iron binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00522 | FTH1; ferritin heavy chain | EC:1.16.3.1 | Exosome | ko04147 | deepkoala |
Genes whose expression across the transcriptome samples of Astreopora myriophthalma tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Astreopora myriophthalma, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |