Gene detail

Detailed information of BRAKERYMEP00000005474.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_022791566.1, fibropellin-1-like [Stylophora pistillata]
Species Astreopora myriophthalma · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000005474

ATGCCTAACTGCTATTGCACTCCAGGATTCACCGGCAAATACTGTGACATCAATGAAGATGAGTGTGCTCCCGGCCCATGCAAGAATGGCGCCTTATGTATCGACGAAGTGAATGGTTACAAATGCGTCTGTCAAGGCGATACCTACGGCCGTCATTGCGAAATTcatcaaaaagaaatacaacagtGTATCGAACGGTGTGACCAACATGTTTGCTGGAGAAATTACTCGAAAGCTGTGGCAGTAACGTGGGGATACGGATCGGGTATTTGCAGCACAAGTCATACGTGTTTTGGTGGCGAGAATGACACGGAATCCAACGTGTTCGATACATTTGTAGAAGTACAGTTGAAGCCTTTGCAGATTCAAGTAGGAGATACGCTAAATTTTACTGCTGATGAAGAAATCATTGCTTACGTGAATGGATTTGTACCGCATCACGTAGTTGCTGCGTATGGAGCAAGAGCGTTCCTCGGATGCAACGAGAGCAATGGAATTCCGATTGTAAATAAACCCACAAATAGTGTGGTCGTAGGATTAGACATTCTGAGGCCGGGGATCAATTATTTTATCGCCAACATAGATTCAACGTTTCGCTGTGATTTTGGTTTACGTCTGAATGTCAGTGTGAAAGAGAACAATTGCAAGGCTTCCGCATCAAACGACACTTGCTCGGGCCGAGGACAGTGTACTACAAACTTCACAACACCAGACTTCCGCTGCAAATGTTGTGGAGGATTTAGGGGTCAGAACTGTGAAGTAGATGTGgatgagtgtgcatctaatccATGTGTTAATGGTGGTACATGTGTTGATGGCATTGGGGCATTTTCTTGTAAATGCGTTGCTGGCTTCACAGGTTCTCATTGTGAAGTTAACATTGATGAATGTTCATCATCACCGTGTGTCCATGGAACTTGCATTGATGAAGTGGATGGTTTTAAATGCCACTGTTCACCTGGTTATGCAGGTGTCCAATGCGATTACAACCTGAAAGAATGTCTGTCCAACCCTTGTCAGAATGGAGGGAGCTGTATTGATGAAGTGAATGGTTACAGATGTGACTGTGGGCCTGGTTTTAAGGGAGATCACTGTCAGATTGACATAGACCTCTGCAAGGACCCCAGCATGTGCATCAATTCTGTGTCTTGTGCTGACAAAGGCCAAAGTGTTGAGTGCACTTGTAAAGCAGGTTTTACAGGATATAACTGTGCGGTAAACATCAATGACTGTCTATCAACTCCATGTAAGAATGGCGGCTCCTGCAGGGACAGAGTCAATGGCTTTGAGTGTATCTGCTTGGATGGCTTTACTGGAAACACATGTGAAGGCTTTGCTGAAAGACCCCTTGGTGAGGAGTTCCATCGACAGTTTAGTCTAAAGTTAATGACTGAAGATTGCAGACTTCTACTGGTGCAGGACAGACTGGCTGAGGCACATATTCAACAGGGGTTAGCTTTCAGCTTTGCCGAAGCTTGCAACTGTAGCTTTAGGGTAACAGACATCATGGACGAGTCCATGTTACTGCAGTGCAGGGACAGTATCAGTGCAGAAGTCAGCATGCAGATTCAACCAGTAAATGATCATTCAGTAGCTCAACTGATTTGCGAGTTCCACAGTTTGCTTACACGGCGCAAGAATGTCATTGATTTAGGTCACAGTACGTATGCCGTGAGAGTTCTGAGTGATGTCTCATCTTGTGATCACTTGAATGACAACAAAAGCTTTGTTGCAAGTAGAAACCAAGATATCGATGGAGCCAGTAATTCAAGGAATCTTTCTATAACTATAGCATCAGTGTGTGCAGCTGTAGGTCTTATTGTGGCAGCTGTTATCGTGTGTTTGAATTGTCGCAGGTCACCACCTCCTATCAAGAAACAGTCCTCAAAGGGTGAAAATGAGCTGATAGAAGATTTGAGTGCTGACCTGCTATCTGCTGTTGCTCCAACACCGAAGTCCATGTATCGTACAAGTGGTGGCTACCATAACATGGCTTTCTCAGGGAGATTTAACCCCGAAAACCCTGTCAAGTCACGCAGGGTGTGA

Transcript

BRAKERYMET00000005474

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q70E20	Sushi, nidogen and EGF-like domain-containing protein 1 OS=Mus musculus OX=10090 GN=Sned1 PE=2 SV=2
Q5ZQU0	Sushi, nidogen and EGF-like domain-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Sned1 PE=2 SV=2
Q8TER0	Sushi, nidogen and EGF-like domain-containing protein 1 OS=Homo sapiens OX=9606 GN=SNED1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007221 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12661 all species →	hEGF	Human growth factor-like EGF	Domain	Interproscan
PF00008 all species →	EGF	EGF-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013032 all species →	Conserved_site	EGF-like, conserved site	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR051830 all species →	Family	Neurogenic locus notch homolog	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR009030 all species →	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24033 all species →	EGF-LIKE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERYMEP00000005474.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.