Genomic Location: BLFK01000172.1:1503946...1508745
NR annotation: XP_020608627.1, signal peptidase complex catalytic subunit SEC11A-like [Orbicella faveolata]
Species Astreopora myriophthalma · all data for this species · gene families
| CDS |
| BRAKERYMET00000006034 |
| Transcript |
| BRAKERYMET00000006034 |
| Protein |
| BRAKERYMEP00000006034.1 |
| UniProt accession | Description |
|---|---|
| P67810 | Signal peptidase complex catalytic subunit SEC11A OS=Bos taurus OX=9913 GN=SEC11A PE=2 SV=1 |
| P67811 | Signal peptidase complex catalytic subunit SEC11A OS=Canis lupus familiaris OX=9615 GN=SEC11A PE=1 SV=1 |
| P67812 | Signal peptidase complex catalytic subunit SEC11A OS=Homo sapiens OX=9606 GN=SEC11A PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006582 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00717 all species → | Peptidase_S24 | Peptidase S24-like | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR015927 all species → | Domain | Peptidase S24/S26A/S26B/S26C | Interproscan |
| IPR019756 all species → | Active_site | Peptidase S26A, signal peptidase I, serine active site | Interproscan |
| IPR019758 all species → | Conserved_site | Peptidase S26A, signal peptidase I, conserved site | Interproscan |
| IPR001733 all species → | Family | Peptidase S26B | Interproscan |
| IPR036286 all species → | Homologous_superfamily | LexA/Signal peptidase-like superfamily | Interproscan |
| IPR019533 all species → | Domain | Peptidase S26 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10806 all species → | SIGNAL PEPTIDASE COMPLEX CATALYTIC SUBUNIT SEC11 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004252 all species → | Molecular Function | serine-type endopeptidase activity | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0006465 all species → | Biological Process | signal peptide processing | Interproscan |
| GO:0008233 all species → | Molecular Function | peptidase activity | Interproscan |
| GO:0005787 all species → | Cellular Component | signal peptidase complex | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K13280 | SEC11, sipW; signal peptidase I | EC:3.4.21.89 | Peptidases and inhibitors | ko01002 | deepkoala |
Genes whose expression across the transcriptome samples of Astreopora myriophthalma tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Astreopora myriophthalma, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |