Gene detail

Detailed information of BRAKERYMEP00000006059.1 in Astreopora myriophthalma

Genomic Location: BLFK01000172.1:1460657...1480565
NR annotation: XP_015774675.1, PREDICTED: uncharacterized protein LOC107352870 [Acropora digitifera]
Species Astreopora myriophthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERYMET00000006059

ATGAGTTTCCTGAGAACAGAGGATAGCGACGCGAGCGAGCGAGAACTTCTTGTAGATGACATCCAACGCATTCGCGAGGTTCTGCACATTTCTAGTGGCGCCTGCAAAATAACCTCcgacgacgaagaagaagaagatgacgGGTCCGACGAAGATGAGGATGAACCGGAGAAATGTGGAGAGAGTCTGACAGATAGCAACTTCAGTAACTTGCAACCCCAGAAACTGAGTTACCTTTCATCGCTTAGTGACGACAATGACAGTACGACTGGAGTGTGTAGAGTTGAAGACTTAGCGAGGGTGCCTGCAATAAACTCTTCAAAGGATATTGTGTCCACATCTGCTAATGTCTCACGTCCTCAACAGCTGAGTAACAGTAACTTGCTACAATCTCCAGATGCTGGAAATGTACCTTCAGATGAATACACTTTTACTGAACTAAAATGTGGTTCAGTGAATTATCAGTCATCCACGCCCATCTGTTCCACAAGTGTTCCATTCATAAGTTTCTCTTCGACAGCCAATAGTACCCTGACAAATGTTGCCAATGTGGATACTCCTAGAACCCATCCTTCCAGAAGCAATGTGCACACACAATACAGTGATCCTTCCTGGCTGGTTGGAACAGATCAGTGCTTGGAGGACAGTAACATCCAAGGAGAGGATGAGGAGGAACTGTTTTTTCAGGGTGACGAAGAAAATGATGATGACTTCGAGAGGCATAGTGAAATTCAACAGTGCTTGAGTTTGAATAGAGATTACCAGcTGGCAGTGTTAGATGAACTTGAAGGAATAGAGTTGGCACTGGCGAAGAACAGGGAAAAACAGTTTGGTTTGCATCAGATGAGAGCAAGTAAAGATGAAGGGAAACCGGAACCACACACGTTAATCAAGTATGGTAATCCTTACTTCAAAGACTCCGGTGGTGTGGGACCACCAGACAATGAGGACACCAAGATAAAAAGACAGAGTTGTCAGATTGGAGGCTATCAAGCTAAGCAAAAAGCCTGGAATGACAAAGAAAAGCAGAGCTTGGCAGAAGGAGTTAGGATGCAAAATCTGGAAAACAAACTTTCACCACTTTTGCAAAAGATACTCAAGTTTCAGACAAAGAAGTTGAAGACAAATGCTGAGTTGCAGGAATTGGAAGATTTGAAGAGAGAGAGTTCAAGAATCAAATCTCTTCCAAAAGAAAAACTGCTTTATGACTTGGAGGGCATCGACTGGGACAAAATAAGCAGCATCTATGTACCAAAACGGACAGCAATTCAGTGTCGGCTACAGTGGTGTAACTTTGGTCATCCTGATGTGAACCGGACACCGTGGACAAAGGAGGAAGACAAGAAGCTGCTACAGCTTGCAAAGGATCCTGAGAACAATTGGGTTACTATTGCACAAAATCTTCAGACCAAGCGCACCCCAATTCATTGTTATGAACGATACCAAAGAAGCTTGAACAAGAACCTTCTCAAGAGTAAGTGGACGCCTGAAGATGACAAGCAGCTTCTTGAAGTTGTACGTGTTGTTGGGCTCGGAAATTGGCCAAGAgTGGCCAGCTTTTTGGAAGGCCGTCAGGGCGATCAGTGTTTGCATCGCTACACACAGACGTTACAGATGGTGAGGAAAGGCAAATGGACCCCGGAAGAGGACGAGCTTCTCAAGAAAGGCGTTGAAAAGTACGGCACATGTTGGAACAAGTTGTCTGAAGTAGTTCCCGGCCGATCAGGACCACAGTGCAGGGAAAGaTGGGTGAACGCCTTGGATCCCAAAATAGACAAAGGGCCGTGGACTCTACAGCAGGATCGAAAGTTGCTGGAAAACGTTGAAAAATTTGGCAAAGGAAATTGGTCCAAGATTGCTCGAGCCTTGGGAAACCGCACCGATAATCAGTGTTGGCGCCGATGGATTGTGCTGCGCAAAGATGACTTCTTGTACTACCGCCAAAATACCTTGCGTAAGAAAAGAGAGCTGGTGTCCAATTTCACTGGTCGAAGGCAGGAAAGACCGGCGCTTGAACCAGAGGATTTGGACATTCCTGATGTTCCCGTTGTGAAAAGCAAGCCTGGCCGTATTCCACTCCCTCCCGAAGTGTCTAAAGAGAGGCGTAGAATGACCAAGGCTAAATCCAGAGAGAAAATACGAGCCGAAAAGAGACGTGCTGAGGAGGCAGCCCGAGAGAAGTTAAGGAAGGAAAAACGACAGGTGCATTATACCGAAATCAGTGACGGCGAGGAGGATGTGATTGCAAGCACGACTAATGCGGGTAACGGAGGCTCGTCCGCAGAAGCCGTTGAAGGGACTAAAAGTCCTCGCAAGAGGAAAGCGGGTGTAGATAGAAAGAGAGTTCAGCCACCTCATCACCGAGTTCTTATGAAGAATAAGCAGCTCGCCAAGCTCACCAAACGGAAGAAAACTTCGCAAGAACGAAAAGTGCGACAGAAGGAATCAACTAAAAGGGAGAAGACTGTCACAGTGTCGGGAGCCTTAGGccctttctctcttcttttacAGGCATTTAGCATCAACATACCCACTGTTCTTCAAGCCATTCAAACGACTTCAGCCACGTCATCCACCGCATCTGCCTCCTCGGTTACAAATGTCTCTTCCGCAACTGCGAACACTGCAGGAGTGCAAAGTGGTGCCTCGGCAAATCAACAGGATGCACAGACCAAAGACAGTGACGGAAATGATACGGACCTGCAAAATCAAAGTAGCAGTAACTCTACTTTTCCCCAGTCCTACGCTAATATCAACACTGGAGATGGTGATGTCACGGCAGGCAGACCAGCCAAACCAGATCAAGGAGATGGACACCAAGCGGTTATGTCAAGTTTAACGGAGTCTCGCGTGGTAGTAGATAAGGCCAGTGAAAGTGGCGTCGATAAATCCGATAAAAGTGCAGCTTTGCTACAAAAGGATGGTATAAACAACAGTGAGACATCGAACTTGGGCCGAGTCAACTCTGAAAGTGGTTCAAATCGTGCGACGCCAGCGTCCTCAGCAAACCAAACTTCTCAAAAACGCGCACCTGCAATTCCTCCTCTTCCACCTTGTTATACAACACTTAGAACTTTTAAATCTCTGCTAATGCTCCGTCCTCAGCTGCAAAAAATAGCTGCCATGAATCCGACTCCTGGCGTCAGCAGAGCAGACTCACTAGTGGGCCAACCCTCATCAGCGGCATGTCCAGCGGCTTCCTCTACTAGCCATGGTAACAGTGTGTCAAGTGTCTCACAGGCCACGTGTGATGAGTCATGTGGCAGTCACACAGACATCTCTGATAACACACATCGGGTCAACGAACAAAGTGATACTGTATCGTCAGGGAATGGAGCTTCAAACAACACTCATGATAATAGGGCTACTTCAGCGGAGGATCACGTGACATCTATAGAGTCCCCACGTGACATACAGCCCGATAACGAACTTTCTGCCGTTCCTGAAAATGTAAGCGAAGATAACTGCTTGGCGATCAGTCCTGGGAGGTCTCAGCTATGCGGTGGTGAGGTGGTGTCGGATTCAGGGCAGCCGAAAACCTCAGGGCCATTGTTGTTGAGTACAAGCTCTCAGCCCGTGGAAGACAGCCCTCAGTCGCCAGCAGGAAATGGTGAAACCCTGTCTGGGCAGGCACGATCTTTAGAAACAACATCCTCAAATACCGGTCCTTGTGCACAAGATAAAGAAGGCCTTGAAAGGCTAGGTAACGATCACGGAATGCCTGGAAAGGAAAATCTTTCAGAAACCGTAAGTACAAGGTCAGATTCTGGAGCGCAAGGTGCGGTCCAGAGCGCGGACATACAAACTTCACCTGCAAGTAAAGAAAGCATTGATGTTACTTCGGCTTCAACGAATGTTTCAGGTGCTACAGAAAATGTTATCTCGGCCGTGACGGGAAATCGTTTGTACCGAAACTCGTACGAGTACAGAATGTTATCCTCTCGGTTCAATAGCTTATTTTTATGGCCAGCCCTCCTTTCCAAAATTCCCTTGCGGTTTACGTCCCAAATTGGACCTGTCTTCGTGCAAAGACATCCTCCACCCGAAGGTGCTGAAAAATTCCGCGCACCTCCGAAGCGTAGAAGACTCACGACGAAACCAGTTGCACCTGTTCTTCCTAAACGCAAATATCCTGGCTTAGCAGCCGTCAGAATGGCTTCCTCGGCGTCCTTCGCTACTCCGGCCCAACAAATGTGCACAGTCGGAAAAAGTTTAGCGATAAGGAAACAGACGAATCCTGAAAGAGCAAATGAAGTGGTTTTCGCTGCCTCTCAGCTGGTGTCATTACACGAAACAACCAAGTCATTGTCGGTGCCTGGCTCCACACGGAAAAGACCGCTTAACGCTCGTGCAGGCAAACGGAAGGCCGTGCCTGTCAAACGAAGGAAGACGACGAGTGAAAGCTCGTCTTCGTCTCGAGACGATGATTCCGATGATCTGGATTTCGTGGTCGATGAGTGTAAAATCCAGCAGTCACAAACTAACGAACCCCGTGTTGTAAGGAACACACGGCAGACCTCCGCTCGGATCCAGTCAGGAGCTACGAGTGCTAACCCAACATCGGGTATGCAAGCCGCTTCTGATATCATAGCAGCACAGAGTAGTGACGCCAACGAACCTGCATCAGTTAGAGAGGTTGTGGTGATCTCGTCCGATTCTCTCAGCGATAACTTGACTTCCTTGCAAGCAAAGCGAAATGACACCGCTAGTCAGCATTCGGTAGCCACATCCAGTCAGAGCCCCAACAAGTCGTCGCCATCCAGTTCGTCCAAGCGGAAAAATCCGCGACCCGAAAAAAATCGTGGCATGCGCTGGAGAGCTATGCTTCCAAATTGTCCGACCGACGACAGTGATGCATAA

Transcript

BRAKERYMET00000006059

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q54NA6	Myb-like protein L OS=Dictyostelium discoideum OX=44689 GN=mybL PE=3 SV=1
Q08759	Transcriptional activator Myb OS=Xenopus laevis OX=8355 GN=myb PE=2 SV=1
P52551	Myb-related protein B OS=Xenopus laevis OX=8355 GN=mybl2 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001328 (this species only) · gene tree & orthology
Transcription factor family	MYB · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00249 all species →	Myb_DNA-binding	Myb-like DNA-binding domain	Domain	Interproscan
PF13921 all species →	Myb_DNA-bind_6	Myb-like DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001005 all species →	Domain	SANT/Myb domain	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR017884 all species →	Domain	SANT domain	Interproscan
IPR017930 all species →	Domain	Myb domain	Interproscan
IPR051575 all species →	Family	Myb-like DNA-binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46621 all species →	SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0001006 all species →	Molecular Function	RNA polymerase III type 3 promoter sequence-specific DNA binding	Interproscan
GO:0019185 all species →	Cellular Component	snRNA-activating protein complex	Interproscan
GO:0042795 all species →	Biological Process	snRNA transcription by RNA polymerase II	Interproscan
GO:0042796 all species →	Biological Process	snRNA transcription by RNA polymerase III	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERYMEP00000006059.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Astreopora myriophthalma tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Astreopora myriophthalma, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →