Genomic Location: BLFK01000172.1:1252355...1276857
NR annotation: XP_029197921.2, LOW QUALITY PROTEIN: phospholipase D1-like [Acropora millepora]
Species Astreopora myriophthalma · all data for this species · gene families
| CDS |
| BRAKERYMET00000006162 |
| Transcript |
| BRAKERYMET00000006162 |
| Protein |
| BRAKERYMEP00000006162.1 |
| UniProt accession | Description |
|---|---|
| Q13393 | Phospholipase D1 OS=Homo sapiens OX=9606 GN=PLD1 PE=1 SV=1 |
| O08684 | Phospholipase D1 OS=Cricetulus griseus OX=10029 GN=PLD1 PE=2 SV=1 |
| Q9Z280 | Phospholipase D1 OS=Mus musculus OX=10090 GN=Pld1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001600 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13091 all species → | PLDc_2 | PLD-like domain | Domain | Interproscan |
| PF00614 all species → | PLDc | Phospholipase D Active site motif | Family | Interproscan |
| PF00787 all species → | PX | PX domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001736 all species → | Domain | Phospholipase D/Transphosphatidylase | Interproscan |
| IPR015679 all species → | Family | Phospholipase D family | Interproscan |
| IPR011993 all species → | Homologous_superfamily | PH-like domain superfamily | Interproscan |
| IPR001849 all species → | Domain | Pleckstrin homology domain | Interproscan |
| IPR001683 all species → | Domain | Phox homology | Interproscan |
| IPR025202 all species → | Domain | Phospholipase D-like domain | Interproscan |
| IPR036871 all species → | Homologous_superfamily | PX domain superfamily | Interproscan |
| IPR016555 all species → | Family | Phospholipase D, eukaryotic type | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR18896 all species → | PHOSPHOLIPASE D | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003824 all species → | Molecular Function | catalytic activity | Interproscan |
| GO:0004630 all species → | Molecular Function | phospholipase D activity | Interproscan |
| GO:0009395 all species → | Biological Process | phospholipid catabolic process | Interproscan |
| GO:0043231 all species → | Cellular Component | intracellular membrane-bounded organelle | Interproscan |
| GO:0060627 all species → | Biological Process | regulation of vesicle-mediated transport | Interproscan |
| GO:0035091 all species → | Molecular Function | phosphatidylinositol binding | Interproscan |
| GO:0006654 all species → | Biological Process | phosphatidic acid biosynthetic process | Interproscan |
| GO:0035556 all species → | Biological Process | intracellular signal transduction | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K01115 | PLD1_2; phospholipase D1/2 | EC:3.1.4.4 | Membrane trafficking | ko04131 | deepkoala |
Genes whose expression across the transcriptome samples of Astreopora myriophthalma tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Astreopora myriophthalma, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |