Detailed information of BRAKERYMEP00000006162.1 in Astreopora myriophthalma

Genomic Location: BLFK01000172.1:1252355...1276857
NR annotation: XP_029197921.2, LOW QUALITY PROTEIN: phospholipase D1-like [Acropora millepora]
Species Astreopora myriophthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q13393Phospholipase D1 OS=Homo sapiens OX=9606 GN=PLD1 PE=1 SV=1
O08684Phospholipase D1 OS=Cricetulus griseus OX=10029 GN=PLD1 PE=2 SV=1
Q9Z280Phospholipase D1 OS=Mus musculus OX=10090 GN=Pld1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001600 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13091
all species →
PLDc_2PLD-like domainDomainInterproscan
PF00614
all species →
PLDcPhospholipase D Active site motifFamilyInterproscan
PF00787
all species →
PXPX domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001736
all species →
DomainPhospholipase D/TransphosphatidylaseInterproscan
IPR015679
all species →
FamilyPhospholipase D familyInterproscan
IPR011993
all species →
Homologous_superfamilyPH-like domain superfamilyInterproscan
IPR001849
all species →
DomainPleckstrin homology domainInterproscan
IPR001683
all species →
DomainPhox homologyInterproscan
IPR025202
all species →
DomainPhospholipase D-like domainInterproscan
IPR036871
all species →
Homologous_superfamilyPX domain superfamilyInterproscan
IPR016555
all species →
FamilyPhospholipase D, eukaryotic typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR18896
all species →
PHOSPHOLIPASE DInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003824
all species →
Molecular Functioncatalytic activityInterproscan
GO:0004630
all species →
Molecular Functionphospholipase D activityInterproscan
GO:0009395
all species →
Biological Processphospholipid catabolic processInterproscan
GO:0043231
all species →
Cellular Componentintracellular membrane-bounded organelleInterproscan
GO:0060627
all species →
Biological Processregulation of vesicle-mediated transportInterproscan
GO:0035091
all species →
Molecular Functionphosphatidylinositol bindingInterproscan
GO:0006654
all species →
Biological Processphosphatidic acid biosynthetic processInterproscan
GO:0035556
all species →
Biological Processintracellular signal transductionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K01115PLD1_2; phospholipase D1/2EC:3.1.4.4
Membrane traffickingko04131deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Astreopora myriophthalma tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Astreopora myriophthalma, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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