Genomic Location: BLFK01000191.1:844509...845662
NR annotation: XP_020626287.1, LOW QUALITY PROTEIN: uncharacterized protein LOC110063639 [Orbicella faveolata]
Species Astreopora myriophthalma · all data for this species · gene families
| CDS |
| BRAKERYMET00000007082 |
| Transcript |
| BRAKERYMET00000007082 |
| Protein |
| BRAKERYMEP00000007082.1 |
| UniProt accession | Description |
|---|---|
| Q9SR52 | Urease OS=Arabidopsis thaliana OX=3702 GN=URE PE=1 SV=1 |
| A5W4B8 | Urease subunit gamma OS=Pseudomonas putida (strain ATCC 700007 / DSM 6899 / JCM 31910 / BCRC 17059 / LMG 24140 / F1) OX=351746 GN=ureA PE=3 SV=1 |
| B0KUZ9 | Urease subunit gamma OS=Pseudomonas putida (strain GB-1) OX=76869 GN=ureA PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0018516 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00547 all species → | Urease_gamma | Urease, gamma subunit | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR050112 all species → | Family | Urease Alpha Subunit | Interproscan |
| IPR002026 all species → | Family | Urease, gamma/gamma-beta subunit | Interproscan |
| IPR036463 all species → | Homologous_superfamily | Urease, gamma subunit superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43440 all species → | UREASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016151 all species → | Molecular Function | nickel cation binding | Interproscan |
| GO:0043419 all species → | Biological Process | urea catabolic process | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K01430 | ureA; urease subunit gamma | EC:3.5.1.5 | Atrazine degradation | ko00791 | deepkoala |
Genes whose expression across the transcriptome samples of Astreopora myriophthalma tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Astreopora myriophthalma, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |