Gene detail

Detailed information of BRAKERYMEP00000007835.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_015753805.1, PREDICTED: transcription elongation factor, mitochondrial-like [Acropora digitifera]
Species Astreopora myriophthalma · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P0AAR8	Uncharacterized protein YbaV OS=Escherichia coli (strain K12) OX=83333 GN=ybaV PE=3 SV=1
P0AAR9	Uncharacterized protein YbaV OS=Shigella flexneri OX=623 GN=ybaV PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008563 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09159 all species →	Ydc2-catalyt	Mitochondrial resolvase Ydc2 / RNA splicing MRS1	Domain	Interproscan
PF12836 all species →	HHH_3	Helix-hairpin-helix motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR010994 all species →	Homologous_superfamily	RuvA domain 2-like	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR015242 all species →	Domain	Mitochondrial resolvase Ydc2, catalytic	Interproscan
IPR039150 all species →	Family	Transcription elongation factor, mitochondrial	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21053 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0006390 all species →	Biological Process	mitochondrial transcription	Interproscan
GO:0006392 all species →	Biological Process	transcription elongation by mitochondrial RNA polymerase	Interproscan
GO:0030337 all species →	Molecular Function	DNA polymerase processivity factor activity	Interproscan
GO:0042645 all species →	Cellular Component	mitochondrial nucleoid	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17658	TEFM; transcription elongation factor, mitochondrial	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.