Gene detail

Detailed information of BRAKERYMEP00000008604.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: CAH3106202.1, unnamed protein product [Porites lobata]
Species Astreopora myriophthalma · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000008604

ATGGccagtaataatattattgttaacagTGTTAAATTGTTGGTCTGTACAGGTAGTGACTCAAGTTTGACAAAGAATTGCAGTGACTGCAACAAATCATACAGATCCTGTGATTGCAAGACTTGTTCAAAGTGTGGAACTCTATTTCACAAGTATTGGGGAACCAGCATCGTTAAAGGGAGATCCCATTGCCGAACTTGTTCTTCAGCAGTGTGTATTACCTGTCATGTGGTTATTAACAAGGCTGTTAAGGTGTGTACAAGATGTctaataaaacaaaaggaagatgaaTTGAGCACACAAAAAGCTCTCTCAGCCATTGGAGAGGCAAGAACAGGGCGagCCAATTCCACATCATCTGCAATTACTGATTCATTTGTGGTGGTATCTCCTGTTTCTCACCTATCTCcagagaagaagaaagaatcACTGTTTGAAGCTGCCAAAACAGGGGACCACTACTCCATGGTTACTCTTCTGAATAATAAGGTTGATGTAAATGTGAGAGATGAAGACAAGAATACTCCACTGTTTTTTGCTGCAGAAGGTGGTCATCTACCTTGTGTGGCTCTTTTAATGgaaagAAATGCAGACATAACAGTGGTTAACAATAAGTCATGGACCCCTCTCCATGCACTAGCTTGGAAAGGAGCAAGTGAGAGTCATGTTGAGTGTGGTGAACTCCTTATACAGATGGGGGTTCCTGTGTTTGCCCTTACAGACACATTAGAGACAGCTGCCGACCTTGCAGCTCGCTCTGGTGGCAAGCAGGAATTGGTCCAGCTGCTGAGAGCTGTTGAAGttgatCTAGCAATGCAAAATTTACAAGAGAGGCTCGAGAGCCCTTCAGGGCTGTCTAGCAAAGATCCCATGTTCAAACGGTACGTTGCCACAGTTGTCAGGCACATCACAGAAACTGTTCCACCTAGTGACCCAAAATGGATGACAAAAGACACATTAGAGACAGCTGCCGACCTTGCAGCTCGCTCTGGTGGCAAGCAGGAATTGGTTCAGCTGCTGAGAGCTGTTGAAGttgatCAAGCAATGCAAAATTTACAAGAGAGGCTCGAGAGCCCTTCAGGGCTGTCTAGCAAAGATCCCATGTTCAAACGGTACGTTGCCACAGTTGTCAGGCACATCACAGAAACTGTTCCACCCAGTGGCCCAAAATGGATGACAAAAGATAGCCAACAGCAAAAGCTTCGACCATTCAAGACACCAGAACTCTTAAGAAGAGAGGAGAAAACTAAATCCTGTGATTGGGGCCTTCGAAAACACTACTCGTGTGAAGAGCTGAGATCCGAAACAACCGGTACAGTACCTCGATTATTCGGAACAAGTTCTCCATCAGCCAGCATTCCTACAGTGGATGTGGAGGCAATAGTCAGACCAGATTTATTGCCGTCTGTTTTAGTGAATCCCTCAAAACTCGAGGAAAAGCTGATGAATTGTCAGGCGGAGAAAGAAGATCTGGAACAGCGCTGCAAGAGGCTCATGCAATCGATCGCCAGTGCAGCGGAGGCGCACAATAAAGAGGTTACAAGATTGCAGCAGGAATTAGACATCGCAAGAGAACAGAAGGACATGGCCGTAAAACGGTGCGAAGCAACGTTTGTaaataaaatggcaaaaattCGCCAAGAAACAGAAGCATCCATTCATGAAGCAAATGCACGGCTTGAGCAAGCGGAGAAGGACCGGACCGAGGTGTTGCATTTACAGAACACTTTCAGGCTATCTTGGGTCCCGGATGAGCTTGTCAACTACTGCTCTAACACCAAATGCCGAGCTCCTTTCACACAAACGCGAAGACGCCATCATTGCCGATGCTGTGGCCGCGTTTTCTGTCACAACTGCACAGGCCAGTCAGCTCCGATTCCAGCGTTTGGGTATGATCAGCTTGTCCGAGTATGCAAtccttgctttgctttgttggACGAAATGTTCTGCGATGAACCGACTGGTTTTAAAGATCCCACGTGA

Transcript

BRAKERYMET00000008604

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9TZD0	Lateral signaling target protein 2 OS=Caenorhabditis elegans OX=6239 GN=lst-2 PE=2 SV=2
A8XJZ8	Lateral signaling target protein 2 OS=Caenorhabditis briggsae OX=6238 GN=lst-2 PE=3 SV=1
Q960X8	Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Drosophila melanogaster OX=7227 GN=Hrs PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002311 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01363 all species →	FYVE	FYVE zinc finger	Domain	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR000306 all species →	Domain	FYVE zinc finger	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR017455 all species →	Domain	Zinc finger, FYVE-related	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24161 all species →	ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01534	zntA; Zn2+/Cd2+-exporting ATPase	EC:7.2.2.12 EC:7.2.2.21	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.