Gene detail

Detailed information of BRAKERYMEP00000008792.1 in Astreopora myriophthalma

Genomic Location: BLFK01000250.1:364506...390534
NR annotation: XP_044177834.1, intersectin-1-like [Acropora millepora]
Species Astreopora myriophthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERYMET00000008792

ATGTTTGTTTACGAAGTGGAATTTTCGTCGGTTATAGCAGGTCATCATGTTTACAAAGCAGCGTGGTCTCCAATCATGGGAGAGTCTCTGGCATGCAGGAAAAATGACCGTAAAGAAGCTAGAGAACACGATGAATATGCAGTTGGGACTTACCTTGAAGCTGACAACAAACTTGTTGGGCATGTGCTGATGGAACTTTCCTTTCTTATATTCACATGTCTCCAAGCCCACCATGAGAACAAAGTACACGTCAAAGTGACTGGATCAAGGAGACTGGAAAACGGACTTGTTGTCCCCAGATCCTTCCTGGCCAGAACGACCAGCAGCAACCAACCTCTAACATACATTTTTAAACCTGTTGCTCCTCCAAAGAAGGATTACTACAGAGCTGTATATGAATTTGAACCGAGAAATCCTGATGAGATAGCACTGGATGAAGGAGACATTGTCACGATTGAACCAGATGCCAAGAAAGCTCCTCCAGGCTGGATCTTTGGTGAAGCAAATGGCAAGAAAGGCCTTTTCCCAGCAAACTACGTGGAAAGGATTACAGAGGACGAGGCCAAATCTGTGAAGCAAGATGACAGCACCCTTTCAACTACAGAAAGTGGCTCTACTGTCAAGTCACTTGCAGCTGCTCTTAGCATGCAGTTTTCTGGTGGCTTGCTTGGGGGGGCATCTGTTACCAGCCAGAATTCATCTGTTATGAGTACAGCTGTTTCCACTGCTGATCCTCCTAAGACGACAGCCAGCCAGCAATCAACTGAAGGTTTCCGAGTGATGGCTTTGTACCCGTACAGAGCACAGAAGGATGATCACCTTACATTCAACAAGAATGATGTGATCATTGTGAAGGAGCAGCAGGACATGTGGTGGTCCGGTGAACTCAATGGTAGCGTTGGGTGGTTTCCAAAGTCTTACGTCAAACTTCTTGGCGCAACGTTAAAGGGTTCAGAAGCTAATCAAACGGCTGCTAAAGAAACATCCGGTAAAATGGAAGTGCCAATTTCTGCTCCTGAAACAAAACCCAGCGTGATGACTACTGTGTTTGAGTGTGTCGCACTGTACAGTTACACTGGAGAGGTCGGCGACTTGAGCTTCATTGAAGGAGATGTGATCAAAGTTCACAAAGACGAGGGCGAATGGTGGGAAGGAAGCTGTAAAGGACAAAAGGGGCTGTTTCCTGCCAATTACGTCAAGAAAAAGGAGGTTGAGTGTGCCATAGTTCTCATTAGTTCAATAAAACTCTTGATTGAACTAGCCATGTTCGTGTTCATCTTCCAGGCACCAAAAGCTGCTCCTCGCACTAAACCAGACTATTTTTGGAGAATGACTCCAGGAAAGGTGTATTTTGTAATTGCAGAAATCGCCACTGTGACGACAACTTACAATGCCGTGACGGCTGAGCAGTTGTCCTTGTGCCCCGGTCAGCTAATCttagtgaaaagaaaaaactcgGATGGCTGGTGGGAAGGAGAGTTACAGGCACGGGGCAAGAAGCGCCAGAGTGGTTTATTTCCTGCAAATCACGTTAAAATCCTGGACAGAAAAGCCTCCGGTGGATCAGCAACTGGGCAGGCTCCCAGTCCTGTCACCGAAGATGCACGGGGCAAGAAGCGCCAGAGTGGTTTATTTCCTGCAAATCACGTTAAAATCCTGGACAGAAAAGCCTCCGGTGGATCAGCAACTGGGCAGGCTCCCAGTCCTGTCACCGAAGATATTTACAGCGTCCCTCTTTCTGCTTCCAGAGTTAAGCTAGAGCAAGTATTGGCCATGTTTCCATACACTGCACAGAATGCTGACGAGCTAACCTTCTTCAAGGGAAGCGTCATCAACGTGCTGAGCAAAGACGGAGAATGGTGGAAAGGCGAGATGAACGGACAAACTGGCGTGTTCCCGTCAAACTACGTTCAGCCTCTGAGTGATGTGAAAGTCGGTACAACGCAGTGGACGGGATCTTTCGATGCGAAAACTTTGGCGTCTATGTCGGCAACAGAACGGCAACGACAGaACGTCATATACGAGTTGATCAACACGGAACAAAGTTATATGGACGATCTCAGTGTGACTTTAGAGGTTTTCTACAATCCCTTGGCTGAATCCGGCATTTTGACTGAACAGGAATTGAGTACTGTGTTTATCAACTGGAAGGAGCTAATTTTGTGCAATACGAGATTACTCAAGGCGTTTTTGATTCGTAAGAAGATGAGTAGCACTGTGGCTATTACACTGATCGGCGATATCCTCTGTGAAATGTTACCTCGTCTCACACCGTACGTGCGATTCTGCAGTTGTCAGCTAAAAGCTTGCCAGTTGCTGCAAACCAAGGCGGAAACGAACCCAGAATTCAAACAGTTAGAGAAGAAGTGTATCGCTGAGCCTCGAGCAAAAGGTCTTCCGTTGAGCAGCTATTTGCTGAAACCGCTACAAAGAATTTGTAAATACCCGCTTCTGATCAGAGAGATTTTGAAATACACTCCAGAGAACCACTTCGACAGAATTAGTTTAGAAACGGCACTGGAGAAAGCTGAAGATCTCTGCCAACAAGTGAATGAAGGCGTTCGCAACCAAGAAAACACTGATAGGCTGGAGTGGCTCCAGGCTCATGTGAACCTGGAGAGTATTGGAGAGGTCAAGAGTGGAAAGGAGCTTAAAGCTTTCTTGTTTAACGACTTCCTCATGTTGACACGGCCGCAAAGCTCCATTACCGGAAGTCTATCCAAGAAGATTGGATTCGAATCCAATGAACAGGAAGTCATGTACTCTATTTACAGAAAGGTGTGA

Transcript

BRAKERYMET00000008792

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9WVE9	Intersectin-1 OS=Rattus norvegicus OX=10116 GN=Itsn1 PE=1 SV=2
Q9Z0R4	Intersectin-1 OS=Mus musculus OX=10090 GN=Itsn1 PE=1 SV=2
O42287	Intersectin-1 OS=Xenopus laevis OX=8355 GN=itsn1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002106 (this species only) · gene tree & orthology
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16652 all species →	PH_13	Pleckstrin homology domain	Domain	Interproscan
PF14604 all species →	SH3_9	Variant SH3 domain	Domain	Interproscan
PF07653 all species →	SH3_2	Variant SH3 domain	Domain	Interproscan
PF00018 all species →	SH3_1	SH3 domain	Domain	Interproscan
PF00621 all species →	RhoGEF	RhoGEF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR035899 all species →	Homologous_superfamily	Dbl homology (DH) domain superfamily	Interproscan
IPR000219 all species →	Domain	Dbl homology (DH) domain	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR001331 all species →	Conserved_site	Guanine-nucleotide dissociation stimulator, CDC24, conserved site	Interproscan
IPR051480 all species →	Family	Endocytic & GEF Adapter	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46006 all species →	RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR AT 64C, ISOFORM A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan
GO:0035025 all species →	Biological Process	positive regulation of Rho protein signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERYMEP00000008792.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.