Gene detail

Detailed information of BRAKERYMEP00000009544.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_029194564.2, suppression of tumorigenicity 18 protein-like isoform X1 [Acropora millepora]
Species abbreviation AMYRI · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000009544

ATGGAAGCTGGGCGAGCTCCTGACGCCAGCAGGGAATTTGCACTCCAGCAAGATGGACAAGAAACGGCTGTCACAGGTTTCAAGAGGGACTCAACATCCCCCGAATTAGAATTTGAAAGGTCACCAAAAATGCCAAAACTTTGCTTGAGCATGAAAACATCTGAGGTCCAAATTGCAGCCAAGCATCAAATGCAAGAAGACACCAAGACTTTAGGGCCTGATGAATCAGTGAGAGGTCTGGATGCAAAGTCTACTGAAACAGTCCCAGAAATTAGCTGTCACACTTGTGGAGAAGATGGAGACAGTGAAGAGTTTCTCAACGAAGAAAAGTTGTACTGCAGGGAGGAATGCATAGAAAGAGAGGCACAGCCCGATTTGCCGGTGGAACCCAACAGGAGAAGGGTTCACGCAACAAGGCAAGCTGTCATGTCCGATCAGGACAGACCAGCTTCTGCAGGTGGCAGAGATCTTAAGAGGCAGTGTAGGGGTCTTGGAATGGCTGcctCTATCCAGGAGCTTATTGGGTGTCCCACGCCAGGATGCGATGGAAAAGGGCACGTCAATGGGAAATTTGCATCACATCGCAGTGTCTATGGATGCCCCTATGTACAGAAAACCAGTAGAAGAAGAACTGATAGTGGAGaCAAGGATTCTGACTTCTGCCCTGACTCATCAAGATGTCCAACACCTGGTTGTGATGGCTCGGGGCACAAGTCTGGATTGTTTGCTTCTCACAGAAGTCTGTATGGATGTCCTAGGAGGATTTCTGTAGACAAACCCAAAGATGGCAGATCTTCGGGAGACGAGAATGGAGCAAGGTGTCCTACCCCTGGTTGTGATGGTACAGGCCACAGAACTGGGATGTATACATCACACAGAAGTGTTTCAGGATGTCCCCTTGCAAATGCCCAGAAATCGGTTACTCGGCAGTGTAAAAGTCCTCCGGCAACACCTCCACACAAGAAAGGGTGTGCACCAAAGTACATTCTCACAGACAAGACTTCTCCCCAGCAGAGCCCTACGTCATCCGATTCAGGGATTTCTTCTGCTTCCAGCACTGACGACAGCTCAGCTAAAAAAGAACTTAACTTTGATTCTGACAGCAAGGATGCACATGGACCAGTTCATTTCACATTCCCAAAAACCAAACCACCAAAAATCAAAACTGAACCTCAACCAGAGGCTTGCACCTCAATGTCGGCACCTGCTGTGCTTCCACCCTTTTCCATGCCAAGTGTCATTACAGCTACCGCAGCTGTCGCAGTGGCTAATTCTGTCATGAGTGGCAATGTTGCCTCATTGTCCAAAGAAATGTCTTCATCAAAGAAATACCTAGATTCCAGTGAACCAGTTATCAAACCAGAACCTCATGAGAGAGGTGATGACGAttatgaagatgatgaagatgaggatgatgaGGCAATGAGCTCGGATGAAATTTGCCTAGAATCTAAGGAAGTGGTGCAGTATACTTCGGATGAGAGTTCCTCTGATGAGGAGGACTTCAgagatgatgttgatgattcCGATTATGGAAGCAGGAAAGGCAAGGAAAAAGATGATTGTTATTCATGTTGTTATAGCAGCAATGCATGTTTTACCGATACAGCAGCCATTTGGAATTCTGTTGTCTTAAATAACTATTGTGGGATGCTGAGGGGACAAATGCCTATGAATTTGCGCTGTCCAACTGAGGGCTGTGATGGTTCCGGTCATGTTAATGGCCGTTTTGCTAGTCATCGTCGGCTCTCTGGTTGTCCACGAATTTCAAGAAACAAGCCTCTCCCAAAAACTCCTGTGAAACGTGAATTTGGGTCCGATGGAAAGCCCAAAGAACTCTTAAGTTGCCCAACTCCAAACTGTGATGGCCGTGGGCATGTGTCAGGTCAATATGCAACTCACAGAAGTTTATCAGGGTGCCCACTTGCAGCTAAAATACAGCAACAGGAACACCAGGAAGTTAGGTACATGTGCCCCACTGTTGGCTGCGATGGAACAGGCCACGTGACTGGCAAGTACTCTTCACACAGAAGTTTGTCAGGTTGTCCTTTGGCACCGAAGCTTGCTCTTCAAAATGCTGAAGCAGGTGGTGGCAGTGGTTCACAGGCAGAGAAACCTGGACCTATGTGCCCAACGCCAGGGTGTGATGGCACGGGCCACTCCAGTGGACAATTTAGCACGCACAGAAGCTTGTCTGGCTGCCCGTTGGTTTCTCCCTCGGAGAAAAAAGTTCTTATGAGACAGGAGGCGGAATCTAAGTTACTGGCGCAAGCGAATGCCAGGGAACCTGAGGTCCGACTGGTGAAAATCCGTTCTGGCAAAGCTCAACAAGAAATCGAAAAGGTCCGTGCCTTGGATAAGGAGATCGACCTTCTCCAGTCTTCAAACCAAGAGTGCGAGAAATTAAACAAGGAACTAGATTCCGAAATTAACCGCTTGGAACAAAGGCTTACCGTCTGCAAGGAGGAAACGGCGAGCGACAGACACAGGACTGGTGTCGTGGAGACCAAACTCGCAGTCGTTCAGACTCGCTTTATTGCCTCGCTGTCCCACGTTCAGATGCCGGACATTGGCGTGAAACTCACGTTTGACTCCATGGATAAGTACATTGATAAATTGCAGGAAATCATCGAAGAAAGGTCTTCCGAATATCGAGCGCTTATTGCAGAGATGAAAGAGGCCTTATCagattttaagttttaa

Transcript

BRAKERYMET00000009544

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UL68	Myelin transcription factor 1-like protein OS=Homo sapiens OX=9606 GN=MYT1L PE=1 SV=3
P97500	Myelin transcription factor 1-like protein OS=Mus musculus OX=10090 GN=Myt1l PE=1 SV=3
P70475	Myelin transcription factor 1-like protein OS=Rattus norvegicus OX=10116 GN=Myt1l PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003980 (this species only)
Transcription factor family	zf-C2HC · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01530 all species →	zf-C2HC	Zinc finger, C2HC type	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036060 all species →	Homologous_superfamily	Zinc finger, C2H2C-type superfamily	Interproscan
IPR002515 all species →	Repeat	Zinc finger, C2H2C-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10816 all species →	MYELIN TRANSCRIPTION FACTOR 1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERYMEP00000009544.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.