Gene detail

Detailed information of BRAKERYMEP00000009773.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_044183207.1, low-density lipoprotein receptor-related protein 2-like [Acropora millepora]
Species Astreopora myriophthalma · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000009773

ATGATTTCAGTTGTGCTGATGGAAAGACTTGTATTGACAAGAAATGGGTTTGTGATAGAGATAATGACTGTGGAGACATGTCAGATGAAGTTGATTGCCCCACTGGTGAACCTTGTCAAAATGACCAGTTTGCATGTGGAAATGGTCATTGCATATTCCAGAGATGGGTTTGTGATCAAGAAAATGACTGTTCCGACTGGACTGATGAACTTAATTGCAGTGACAACGAGGCAGTGTGATGCAGCTACTGAGTTCAGATGCTCTGATGGAACATGCATAAATATCAACTGGAAATGCGATGGGGACGCTGACTGTGCTAACAAATCTGATGAACAAGGCTGTGGTCCTGTCACATGTTTACCCAACCAGTGGCAGTGTATTGGGACCACGCAGTGCTTGGCAATGGATCAAGTTTGCGATGGGAATAATGACTGTGGTGATAACTCAGATGAAGGGACACATTGCTTAAATCAAGATTGCTTGAAGCTGAAGAACTGTAGCCATAATCTCTGTCGGCAGACTCCGAAAGGACCAGAGTGTCTCTGTAAAAGAGGTTACCTCTTAGATTCTGACGGGGTAACTTGCAATGATATAAATGAATGTTTAACGATCGGAATCTGTGATCATCATTGTGTTAACACCAATGGATCTTACAAGTGCTTTTGTGCGGAGGGCTATGTATTTGAGCCCCCACGGACGTGCCGACCTCAAGgaGTTAAAGAGCCATGGCTATTATTAGCAAACAGAAAGAGCATACGCCAAGCAAGCCTGGATGGTAATGTTTACAGTGACGTGTTCTCGAACTTGAGTCGTACAGTGGCTCTTGACTTTGATATCAGTGAAGGCAAACTGTACTGGACGGATGTGATCAACAATGCCATATATAGTACACGCATTGTGTTAGATAAGTACGGCAGCCATCCTGGGAAGGTGCAAGCAATTGTAAAAGATGGACTAGCCGTACCAGTTGGCATTGCCGTTGACTGGGTGgccaaaaatttgtattttgtggaTAGCTCTGCCAGGCGGATCTTTGTTTGCAAACTGAATGGAAGCTACCTGTCATCGCTAATCACAAAAGATCTCGAAAATCCCAGGAGTATTGCGGTTGACCCGAGGGATGGTTACTTGTTCTGGACAGATTGGGGAATGCACAAGATAGAGAGAGCAGGAATGGACGGGTCAAACAGAACAGTGATTGCAAGCACAGGCATTTATTGGCCCAATGCACTCACCTTGGACTACCCAACACGTAAAATATATTGGGCAGATGCCCATTTTGATTACATAGGAGGCATGAGCTATGATGGCGGGGAGAGGAGAAGGATTCTTGGTCACCCATTAGTGGCTCATCCATTTGCTATAACTGTTTTTAGAAATGATTTATACTTCTCCGATTGGACGCGACAAGCCGTTGTGAAAGTGGACAAGTTTATTGCTAATGAAAGCAAAATCCTTTTGGGCGGCCTTAGACAGCCCATGGATGTCCAAGTGTATCACAGTGCGAGGCAACCACACACCTTTAATCCTTGTAACGACAGTAGTAAATGTGGTTGTCAGCAACTGTGTCTCGTCACTCCTGCACCGACAGGAGGCTGTGTATGCAGATGTATGATACGTTACAAATTGGCTACAGATAAGAAATCCTGCATTCTGCAAGATACTTTCTTAATTTACGCACGGGGGACCGAAATCGTAGGCATGCCCATTGAGGCTAATGCCTCTGGGGACACAATCGCACCTCTGCTCGGGCTTGGGAATGCCATGGGTCTGGACTACGATGCAAAAGAACAAATGATTTACTTTTCCGATATTGTGCGAGACAACATAAGCAGGTTCAGTATTAATACTAGAAAAGTCGAAGTGCTGGTAAATTCGGTTAAAAACGTTGATGGTATAGCGGTGGATTGGCTTGGACGGAACTTATATTGGACCGATGCCGAAGCACACGAGGTGGCAGTTGCTAAGCTGAATGGATCGTTCAAGAAAGTCTTGTTCCGTGAAGGTGTTTCACGGCCTAGGGCTATAATTTTGCACCCAGTGGAAGGGAAAATGTATTGGAGTGACTGGAATTCTCCAGCAAAAATAGAAGTGGCCAACATGGATGGCACAGCTCGTGACGTTTTAGTTCAGGGAAAAGGCCTTTCCTGGCCTAATGGTCTTAGCATCGACTACCAAGCAAGGAAGCTCTATTGGGCGGATGCATTGACAGACTTGATAGAATGTGCTGAGCTTGATGGTAGCAATCGCACTGCGATAGTGCGAGGTCTGTCACATCCATTTGGTCTTGATGTTGACAATGGCTTTGTCTATTGGACAGACTGGAGTAGCGAAGACATTCAGCGGGCAAGCATTAGCGATCCCTCGTCTCTTGTAGTTCTGAGATCTGGACTGAAGCATCTAATGGAAGTCCGGGTGTATAATCCCAAAAAACAGACAGGTGTGTCCAGTACTCTTAATTAA

Transcript

BRAKERYMET00000009773

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
C0HL13	Low-density lipoprotein receptor-related protein 2 OS=Sus scrofa OX=9823 GN=LRP2 PE=1 SV=1
A2ARV4	Low-density lipoprotein receptor-related protein 2 OS=Mus musculus OX=10090 GN=Lrp2 PE=1 SV=1
P98158	Low-density lipoprotein receptor-related protein 2 OS=Rattus norvegicus OX=10116 GN=Lrp2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004273 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07645 all species →	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan
PF00058 all species →	Ldl_recept_b	Low-density lipoprotein receptor repeat class B	Repeat	Interproscan
PF00057 all species →	Ldl_recept_a	Low-density lipoprotein receptor domain class A	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002172 all species →	Repeat	Low-density lipoprotein (LDL) receptor class A repeat	Interproscan
IPR000033 all species →	Repeat	LDLR class B repeat	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR036055 all species →	Homologous_superfamily	LDL receptor-like superfamily	Interproscan
IPR023415 all species →	Conserved_site	Low-density lipoprotein (LDL) receptor class A, conserved site	Interproscan
IPR049883 all species →	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR011042 all species →	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR009030 all species →	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR050778 all species →	Family	Cueball/EGF/LRP/Nidogen	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46513 all species →	VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERYMEP00000009773.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.