Gene detail

Detailed information of BRAKERYMEP00000010300.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_029201832.2, E3 ubiquitin-protein ligase TTC3-like isoform X3 [Acropora millepora]
Species Astreopora myriophthalma · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000010300

ATGTCTCGGGGGACGTCGAAACACATCGACAGTGGTGATAGCGATGTGCCGAATTTGCTTCCATGCAGCACAGACGACGAGGATTCCGATGCTGAAGAATATCTCAGAAAAAcgacaaagaaaacgaaagggAGGGCCAAGCCAAAGAACAACGCTGAGTGTGCAGATATGTGGTACAAACTGAGCAaagatgagaaagaaaaaaatatccatgttatgaaaatttatttactttcaCCATTCCTTTTTGGACAAGTAAACCAAGATGACAAGtgGATTAGCTGGGCATATGATTGTGGATTGTTGCCTTCAGAGAGCTCATTTGAAATCAAAGCATTGGAAGAGAAACATTTCTATGCAGTGGATTTAATCGAAGAAGCATTTGATAAACTAGCTGATAATGCGCTTCGCAAGAACAAAGATGGACTGGTTAAAACTCTAGACATCATTGGAAGCCCAGGATTGAATATGTCCCAGCACCTTGATAAAGCCATATGCTGTGCTGAAAGCTTCCTGGCCTTCACCAGTTTAAGGAGTAAAATTGAACTGAAGCAGGGAATGACTAAAAAACAAGGAGATATGGCATTGCTTCTTGCACACAATCAAGtttcGTGTCATATCAAAGATTTGGCATCAGGTGTTAATATTGTGGAAACATTTAAGGAAAACTGCCGAAAGGAGGAAGAACAAACAGTTGACAAGAAGAAGGAGGGAAATGCTGCTTTTTCTAAAGGCCAATTCAAAAGGGCCATATCAGTCTATACGTTGGCCTTGCATTCAAGTCCCTACAATCATGTCCTTTATGGTAACAGAGCTCAGAGCTACCTCAAAACTCAGGAGCCATGGCGTGCGCTTGCCGATGGGCGAAGAGCAGTAGTGTTAAAAGTGGATTGGCACAAGGCTCAGTACAGATATGCACAGGCATTTTATGAAATTGGCCAAGTTAAAAGAGCCAAGGAGACAAACAGGAAAGCATGGAAAATTTGTGTGGAAAGGAAGGACTTAGACATACAATTTGAAAGATTTGAGAAGGGCATCGAACCAAGTACCGCTAATGATGCTAAAGGAAAATCATTTATAAACAAGAACGCTGCAAAACATTGTAAACGGCAGCTGGATGACCTCCCTGGCTTAGTGTCTCCAAACCCAAGTGACACAAGTTCAGATGAGGAATACACTCGGCCTGGCTTTGGCATGCCAGATCTAGTTGATTATGAGGAGGAAGATAGTGCAGACTCTGCTTATAATCAAAACGAGGATCTGAACTCTGACAGCTGTGATGGATATGAATCGGACGATTCATCTGCACGGAAGAAGCCAAATACAGCCACTGAGcagaagaagaaaagaCCCAACAGACTGCGGCAAGCCGTGCGAGAAACAGTGCAGGATAAAGCTAAACAAGAGGAAAAGGCTAAGAGAGCAGacaaagagaagaaaatggCAGAGCTTGCAGCcaagaaggaaaacaagaagatcgcaaaaagaaacaaaaaggcaaCGCCTATGCAAGTGAATCAGAATGGCAATTCACAGAGAAAGCTGGAATTCATAGCCTTCCTTAAACAAGGAAGCAAGGCAATTTTGGATAAAAAGTCTGTGCTAGCTGTTCAGAACTATTCAGAAGCCATGAGTTTATTAGAACAACAGGAGTTCCAATTTCAGGTGTTTGACATGAAGGAGATAGATTTTGTTATATTAGTGTATGGTTTTGGTGCAGCTTATTTGGAGCTCGGTGGACACGAGgAACTGCTAAAAGCCAAAAAACAGTTTGAGATAATTCTAGTGAAGCATAAAAATGTAGTTTTTCCCTTAGCATACCTGGGCACAGGAAGAGTGTTTTATAAGCAGAACAGATTTGCAGAAGCTTTAGAACCTTTAGAAAAAGGCCTTGCATTAGTCAACAAATTGGGTGAAGATCTGGCTACGTACAGATGGCCTGGTTCCCAGGTTATTATCGATGAGACAAGATCTGGAAAGTTACTGAGTGCCATTGAAACTTTAATAAGAATTTGCCGTCATCCTCCTCGTCCTGATGCAGTGTGTAGATATCCCGACTGCACGAATAAATCACAGATCTACCTTACAGACACAGACTACAAAGGGTACGTTCGACTTATCTGTGATGAAGGTTGTAAAGTTGATTTCCATCCTGGTtgctggaaaaaacaaaaaagtactCAAGAGGAAAAGACAGGAGACAAGGACTTTCTTGAAGATACATGCATGACACCAGACTGTAGAGGCGGTGTTGTCAACGTTCAGATCTTTGATAATGTTGGCCTTAAGACAGAGTTCAAACATGAGAAGCTGAATGCAAAGACagaaaccaaacccaaagctACCAAGCAAAATAAAGTCAAACCAggTGGTATTGGtgtcaaacaaaagaagaaaaaagaaaaagaggaccTGAAGATGGACGATGCTACAACAAATGTGGATGCAGGAGAGGAAAAGGAGTCTACCAAACCAGCTCCACCATCGACACTTTTTACTGAAGGTGAAGGAGTTTTCATCTTGAGGAAAGAAGATGACGACGAGCCAACCAAGGGAGGTGGCAAGGctaaaaccaaaaagaaaaaactaaagAATACTCAGACATTGGATGAATTTCTCAAGGATCGCGGTGGACAGAAAACGTTTCGACCTGGCTTTGGGGAAGTGTCTGGTGACTTGGATGATATTACTTTTCCTAAAGGTAAATTTGAGTTTGTTCCACCTCCACCGGGATGGAGCCAGCATGAAATGGAAGCTCCGTTTTCCATTCCCCCTCACTTACAAGGAGACGCAGCTCACTTTGAGGCAGGCTATGGGCAAGGTTTCAACACGTTCTCTGAGCCTGTGGTAACAGAACCGCAACTGGAGATTGATCTGCAAGCTGTCACGGATTATGTTAGTTCATTGCTTCAAGAGATTTTACGCTTAAATGGGCCTTTGGAGTTGGCAGACCCGAAAATTATGCAACCTCTAAGCATATTGCCTGACAAGTATCAGGACATTATATCTAACGCGGGCGGTCTTAAGCCCATCCTAGAACAATCTGGCAAGTTCGTGTTTCAAGGGAACAGAGTAATGTTGCCGGAGGACAAAGAAATTGAAGACGTTTTGCAAAATAGGAAACCGCAGACTGACAATCCGTTTCTTGAACGAATTAATGGCTTGAACGACGCCAAAGGAGAAAATTCGTTTCACGGTAAATCGATATGGGAATCTGAGAAAAGTGATTTCGGAACGTCAGGGATTTTTCAAACgtcttctggacaatttaaaagTACCGCGTCAAAATTTAATCCTGATGCGAAGGAATTTGTTCCCTCGGTGTCTCAAACGGATCTCTTATGTAGTAGTTCATCAGTGACATCTTTAACCAGTGATGGTGCTACGTTACAAGAAACCGAATTAATCGACAATGAAGATGAGGAAGGGACTACAGGTATTGAAGAACTTGAGCCCGATTCGAGCGAAAGCGAATTTAAAAATGCCTTGGAAAATTTTGCGGGCAATGTGGTTGAAAATGGTGCAACAGACATGCAAGTGAACAACGGGAAACACGACAGCGTTAATGTTAATGCTGCGAACGATGCAGCTGCATTCAAAGACGACTCTTTGCCTTCAAATGGAAATCATTTGGAAGATTCGGCATTGTGTGATTTGAATAAGGCTGCTAATGTTTGTGCACCGATGGAAGATGCCGTTTCTGTTGTGGAGGAAACAGATGAACTGGTAAAAGCTCACCAACGTACGGGTAGCAACAATTCAGTTAGCGAACCAGTGGTTTCCAGCAAGTCGAAGTCTGTACAAACTCAACCCAACATGAAAACCAAATGTGTGGCGACAGATCCAATCCCTGAACCTTTCAAAGCGGAATATCAGCGCGCTGTAGCAGAAAAAGAAGCCTGCCAGGCCAGGCTACAGGAAACGACTGACAAACGCAATGCTTTACTTAGTAAGAGCTCGTCCGAAGTAGATAAATTTAAGAAGAAGCTTTTGGATGCActgcaggagaaggagAAATATTGCAAAGAACTACAGGATCTAAAACAAAAGAGCAGTGAGGAAATACGGAAGCTGCGCCAACTGTGCGAAGGCAAGGAAGACAAGAtaaaaattttaaacaaaaagcTGGTTCAAGATGCGGAGGACAAgTCCAGTGTGATCAACATCCTTAAAAAAGAGCTGGCGTCTTGTAAAGGGCAGTTCAGCTCAGAGAAGGATTCTTGGAATAAAGAACGCTCCGAAAAAGACGAACTGTTAAAAAATATGCAAGTCCAACATCAGCAGCAGCAAGCGCGAGCTCAGGACGCAGAAATCAAGCTTCTGGAGCTTAGACGCGATGTTGGTTTGAGGTTTTTGGAACGAGCTTATCAGGAGTCACACGTAACCATTAACAACTTGATACAAGCTGTAAATGCCAGAATTGCTGGTCCGAAAGCAGAGGAGCTGATTGCTAAGTGGAAGAGTTATACTGTCGAGTGCCATCAGAGAGTAATGCAGTGTAAGgCAACGTTTAATGAGCAGATTGAGCTTCTTAAAAATGGCAGGACGCTGGCAAGTGTTCCACAACTCAATATCCCCGGTCCACCTCCGTATCCAGCCATTCCAGTTTTACAGTCTCTGGTACCCGGGCAGCAGCAACCACAAAACCAAGTACAGCCCCAACCTCAGTCACAACCCCAACCCCAACCCCAACCCCCTGGGGAAAGCAATGCTCCAGTGCTTAGGGCAGCTGACCCTCCCCTCCCTAATGCCTCTGCTGCTGGTGGTGGTGCTGCTGCTGCGGCGGCGGGTCCTGCAACTGGCGCTCCTCCATCCACGAGCACTACTGTTGTCAATGGAGACAAACCCAATGATGCAGGTTGTGTCGCAGCTACTGCCGCTGCTGCTGTCCCAGGTGCTGCCGCAGCAGCTGCTAACGCGGCTGAGAAAGCGAAATCCAACAGCTTTGAGAAGATCATGCTGCGTCTGTCAACCATGTATCCGAATTTTAGCCGATTGGAATTGACCGGATTTATTAAAGAGGTGCGACAGAATAAACATGGTTCATTGACTGGTTTGTCACTGGAGGATATCGTCACTAGCGTGTCAGAGCTTGTGGAGCAAAAGATAAAGGCTGGTCTGTTGCGCAATACTGGTGCTCCACCCTCCAGTAGTCCTACAACACAGCGAGCAACAAAAGCCGGTGCCTTGCCACAGGTACCCCAGCCAGCTCTACCACAAGGAGTCCAGGCCGCGAAGTTATTTGCCGCGGACGTGCCTAAAACAATGCTTGTGGGCGGAAGTTATGAAGAGGATCCGTGCGTCATATGTCACGAGGACATGAATGCGGCCAGTAATATTGTTACCTTGGAATGTGGACACAGATATCACTCACCGGTAACTTGA

Transcript

BRAKERYMET00000010300

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O88196	E3 ubiquitin-protein ligase TTC3 OS=Mus musculus OX=10090 GN=Ttc3 PE=1 SV=2
D3ZSP7	E3 ubiquitin-protein ligase TTC3 OS=Rattus norvegicus OX=10116 GN=Ttc3 PE=3 SV=3
P53804	E3 ubiquitin-protein ligase TTC3 OS=Homo sapiens OX=9606 GN=TTC3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002621 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07145 all species →	PAM2	Ataxin-2 C-terminal region	Motif	Interproscan
PF19179 all species →	TTC3_DZIP3_dom	E3 ubiquitin-protein ligase TTC3/DZIP3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR009818 all species →	Domain	Ataxin-2, C-terminal	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR043866 all species →	Domain	E3 ubiquitin-protein ligase TTC3/DZIP3 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR17550 all species →	E3 UBIQUITIN-PROTEIN LIGASE TTC3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15712	TTC3; E3 ubiquitin-protein ligase TTC3	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.