Gene detail

Detailed information of BRAKERYMEP00000010343.1 in Astreopora myriophthalma

Genomic Location: BLFK01000292.1:756452...777541
NR annotation: CAH3177891.1, unnamed protein product [Porites lobata]
Species Astreopora myriophthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERYMET00000010343

ATGACAGAACAAGCTGAAAAGGGTCTGAAGGTTATAGCAATTTCTGCACATGACCCTAATCAGGAAGATGACCTTGAACAAGAGGAAGCTGTTTTAACAGCCCCTGATGCTTCCTCTCAGCTCCCAGTAAAAACAGGAGACACATTTGAAGTTTTTGGCAGAGATGTTAACTGGTGGCTTTACGTAGAGCATCTTGACAGTGGAAACAAGGGTTACATCCCAAGTGCTTGTGTAGTGCCAGTGAAGGATGACTTAACAAATGAAGGCAAGGAAGAGTTGGACCATGATATAGAACTGACAGTAAACTCAAGTGTTGATCTGAAGATCTTTCCCGAGGCTCCAGCTGAAGAAGTGGTTGTTGACAGGGTTGAGTGTCCAGAGGAAAAGGCCAATATTTTCTCAAAACTGACTTTCTGGTGGCTAAACAGCTTAATCATCAAAGGTTTCAAGAATCCTTTGGCTGACTGTGACTTGTGGGCCTTGGGAAAAAGTAACAGATCTTTGACTATTGTGCCTAAGTTTATGGAGAAGTGGGCCAAGGAGGAAAAAAGATGTGCAATTGGAAAATCATGCCCTATGGAAGAACAGCAAGATGTTGAAAAAGCTGGACTGAAAGAAGATGAAAAGGAGGGACAAGTTGAGGAAGAATTGTTGACcaaaaagaagggaaaactAAAAGAGAAGAGGGAACAGGAGAAGAAGAGGAAAGCTTCATTGCTGAGAGCCATTGCATACCTGTTTGGGAAGCATTTCCTGTTTGGAATGTTTCTGAAACTGATTAATGATGTCATTCAGTTTGTTCAACCACAGTTGTTGAACTTGTTGATCTCGTACACAAAAGACAGTGGCAATCCAGACGAAAAATGGAAGGGATATGTTTATGCAATTTCAATGTTTGTCGTTGCCATAACAATGTCAGTTGTCATGCATCAGTACTGGCAAATTGTGATTGTTATTGGAATGAGGATACGAACAGCAGTTATTGGAATGGTGTATGCTAAGgcccttgctttgaacaacagTGGCCGAAAAGAATCAACGGCAGGTGAGATGGTGAACCTGATGTCAGTGGATGCACAACGACTTATGGATCTCACAAGTTATATAAATGTTCTGTGGTCATCCCCTTTAACAATTGTAATTGCAATGTACTTCTTGTATGATGTAATGGGTCCATCCATTTTCGCGGGGATAGGAGTCTTGGTGCTGTTAATTCCATTTAACGTGGTTGTCAGCAGGATAGCTAGAAAACTACAGGTGAAACAAATGGAGGCAAAGGACAAGCGCATCAAACTgatgaatgaaattttgagtGGAATTAAGGTCCTTAAATTGTATGCATGGGAAAAGTCCTTTATGAGCCAAGTGTCAAAAATACGTGAGGAGGAATTACATCAGCTAAAGAATGCTGCATATCTCAATGCCTCATTTGCTTTCACGTTCACATGTGCTCCATTCTTGGTTGCCCTTGCAACATTTGCCATCTACGTTTTAACTGGGAATGAGTTGACAGCCAACAAGGCCTTTGTGGCACTCTCACTTTTCAATATCCTAAGATTTCCTGTCACCATGCTGCCAAATATCATCATCAGTATGATACAGGGCAAGGTCTCCATTGATCGGCTAACTAATTTTCTTAATCTGGACGAATTGGATCTTAATAATGTTGTAAAGACCATGCCGGAACACATCAGTTCACAAGCTATTCTCGTGGAGGACGGATCCTTCAGCTGGGATAAAGAGGAAAAGCCAATTTTACAAAACATCAATGTTAACATTCCCAGCGGCTCACTGGTGGCAGTGGTCGGCCAAGTTGGAAGTGGAAAAACTACTTTACTATCAGCTTTCCTTGGGGAAACCGAAAAGATCTCAGGCAAAGTCTATGTTCAGGGTTCTGTGGCTTATGTTCCTCAGCAAGCATGGATACAGAATGCTACAGTCAGAGATAACATTCTGTTCGGAAGAAGCTTTGATCCTAAACGTTACTGTCGGACAATCAATTCCTGCGCTTTGAGAACTGACATGGATATTTTGCCAGGAGGAGATATGACAGAGATCGGGGAAAAGGGTATTAACCTTAGTGGAGGTCAAAAACAACGTATTAGCCTGGCACGTGCAGTGTATTTTGATGCTGATGTCTATCTTTTGGATGATCCGCTCAGTGCTGTGGATTCACATGTGGGAAAACACATCTTCGATAAAGTTATAGGACCAAGAGGAAAGCTCCGAAAGAAGACACGTATATTTGTTACCCATGGAGTGGGTTTTCTTCCACAAGTCGATCAGATTATTGTTATGCAAAATGGAAGAATATCGGAGgttGGAACATACAACGAACTACTTCAAAATGAAGGGACGTTTTCAGAATTTCTAAAAACATTTGCTGCTGAGCAGAATACCGCGGATGATGAGCCACAAACCCAAACGGAATCGATGTTACAGGAGATTCCTGAGAGCTCTGAAGAGATTGAGTTTAGGCCACGTAGCGAGAGCGTAGATGTCCCGGACAGGAGCGGTAGTCAGGCTGAAATTCCGTTCCGCAGAAAGAGAGCGGACAGTCTATCAGTTGTAACAGTTGATACCGCTGATCTGGATTGTCAGTTCACCAGGCCAGATGAAGAGCACGAGGACAAGATTATTGAAGAGGAGAAAGCTGAAACTGGAAGGGTCAAGTTTGCAGTATTTTGGGCGTACGCCAAGTCGGTCAAAGTCTACCTGGCAGTAGCCTTTGTGCTTTTCTTACTTCTTGCGGAAGTCACGTCCGTTTCTTCAGGCATCTGGTTGGCGCGCTGGAGTTCAGCCAAGGTGACGTCCGATGATGAGCGTGACATGTATCTGGGTGTCTATGCGGGCTTTGGCGTCACGCAAGCTGTGTGCGTATTAATATCATCAATGTGTTTAGCTCTGGGGTCGAAGATCGCGTCACGCTATCTCCATGAAAGCATTCTGGTCAACGTCATGCACCTGCCAATGTCGTTTTTCGAGACCACTCCCTTGGGGAGGATCGTGAATCGCTTCTCGAAGGACATCAGTACGATTGATGATAAAGTTCCCTTGACCCTTGTAAACTTCCTTCGCCAATTCTTTGCCGTTTTTGGTACCATTGTTGCCATCAGTTTTGCCACTCCAATCTTCTTAGTGTTGATTGTTCCTCTTGGCGTTCTCTACTTTTTCGTTCAGAGAGTATACGTCGCCACGTCACGACAACTTAAGAGGATCGAGTCGGTGAGCAGGTCGCCGATCTTCAATAACTTCTTTGAGACAATCAACGGAACTAGTACCATCCGGGCGTTTGGTCAGCAACAGCGCTTCATCCGGGATAATTACTATAGGGTCGATGAAAATCACGTGGCTTACTATCCTTCAGTCTCAGCCAACAGGTGGCTTGCTCTTCGCCTTGAGTTTGTGGCCAACTTGGTTATCCTTTTTGCTGCACTGTTTTCCGTGATCAGCCGCGACTCATTAGAAAGTGGCCTGGTGGGATTATCCATCACTTACGCCTTACAGATTACCTTCGCTCTAAACTGGATGGTGCGCACGAGCACTGAGCTGGAAGCAAACATTGTTTCAGTAGAACGAGTCAAGGAATATTCGGAGACGCCTACTGAGGCTGAGTGGATTCTCCCAGATAATCGTCCCCCAGTGGGCTGGCCCGATAAGGGAAGCATTGTAATAGAAGAATTTGACCTAAAGTACAGAGAAGGGTTACCGCTTGTACTCAAGCAGATCAGTTGCGGTATTAAGCCAGGAGAAAAGGTCGGTATTGTGGGTCGCACTGGGGCTGGCAAATCCACACTGACCTTGGCTTTGTTCCGTATCCTCGAGAGAGCTGGGGGAAGGATTATTATAGATGGCATCGATATCGCAAAGATTGGACTCCAGGATCTGCGATCAAGACTCACTATAATCCCACAGGACCCAGTGTTGTTCTCTGGAACTCTCCGTCTAAACTTGGATCCGTTTGACAGTCACACTGACGAGGAGCTGTGGAAAATTCTGGAACTGAGTCACTTGAAAAACTTTGTATCAGGATTAGAACAGGGGCTTCTTTATCCTGTTACTGAGGAAGGAGGGAATCTAAGTGTTGGTCAACGTCAGTTGGTGTGTTTAGCGCGTGCGCTGCTCCGGAAAAGCAAAGTCCTTGTTCTTGATGAAGCCACGGCCGCGGTGGACCTGGAGACTGATGAACTCATTCAACAGACCATACGGCGAGAGTTCGCTGACCGCACAGTTTTTACAATTGCTCACAGGCTCAATACCATTATGGACTATACGAGGATCATGGTTCTTGATAAAGGGTTTATGATGGAGTTTGACTCGCCAGAGAATCTCTTGGCTCTGAAAGGGATTTTCTACAGTATGGCGCAAGATGCCGGCTTAGCTTAG

Transcript

BRAKERYMET00000010343

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5F364	Multidrug resistance-associated protein 1 OS=Gallus gallus OX=9031 GN=ABCC1 PE=2 SV=1
Q6UR05	Multidrug resistance-associated protein 1 OS=Canis lupus familiaris OX=9615 GN=ABCC1 PE=1 SV=1
Q8CG09	Multidrug resistance-associated protein 1 OS=Rattus norvegicus OX=10116 GN=Abcc1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000027 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00005 all species →	ABC_tran	ABC transporter	Domain	Interproscan
PF07653 all species →	SH3_2	Variant SH3 domain	Domain	Interproscan
PF00664 all species →	ABC_membrane	ABC transporter transmembrane region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017871 all species →	Conserved_site	ABC transporter-like, conserved site	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR005292 all species →	Family	Multi drug resistance-associated protein	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR003439 all species →	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR011527 all species →	Domain	ABC transporter type 1, transmembrane domain	Interproscan
IPR036640 all species →	Homologous_superfamily	ABC transporter type 1, transmembrane domain superfamily	Interproscan
IPR050173 all species →	Family	ATP-binding cassette transporter C	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24223 all species →	ATP-BINDING CASSETTE SUB-FAMILY C	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0140359 all species →	Molecular Function	ABC-type transporter activity	Interproscan
GO:0042626 all species →	Molecular Function	ATPase-coupled transmembrane transporter activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERYMEP00000010343.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.