Gene detail

Detailed information of BRAKERYMEP00000010404.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: XP_015762628.1, PREDICTED: glycine betaine transporter OpuD-like [Acropora digitifera]
Species Astreopora myriophthalma · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000010404

ATGGATGCCGAGGAAAATCTGCAGgaacatttgaagaaatgtcgcTGGTGGGAAGTAAAATTGCCTTTCATGAAAATCGGGAAGTTTAATCTCGGAATCTTCCTGAAGTTCAATCCGCTCGTGAGCTTCTTTTCGGCGGCAATTATCTGGGGCTTCGTTATTTGGTGTATAGTGAAGTCAGAAGCTGCTAACGAAGAGATGTCGAGATGGACGATCTGGATTACTGAAAAGTTCACCTGGATGTACATCGGCACTCAAAACATCTGGGCTGTTCTCGTCATCATGTTGTACTTCTCCAAATACTCGAACATGAAACTCGGGCGAGACGACGAGGAACCTGAATTCAGCGATGCTACCTACTTCACAATGCTGTTTGCAGCTGGTATCGGCATCGGGTTGTTTTACTTCGGTGTGGCTGAGCCAATTTTCCACTATGTTCCAGGGGATTATGGCAACCGTTACGAAGGAAGGTACACCGACAACCAATTGGCTCAGGACGCCATGAATCTGACGTTCTTTCACTGGGGTATTCATGGTTGGATTGTGTACGTGGTGGTCGGTCTACTCTTGGGTTTCGTGTGCTACAGGCAAGGTCTTCCTATGACGGTCCGCTCCTGCTTCCACCCGCTAATTGGGGACAAGATCTATGGCTGGATGGGCGATGTTATTGATATCCTTTCCATTTGTGGGACCATGTTTGGCGTCTGCACTAGTCTTGGATTGGGTGCCATTCAACTCAATACAGGCATAAATCGCCTGAATCCAAACATCGAGATCTCGTCTACCAACCAGATTATCATTATCTGGTGCGTGACTGCCTGTGCGACCGTGTCTGTAATCACCGGCCTCAAGCTTGGAATCAGACGACTGAGCGAAATCTGCTTCGCCATCGGCATGCTTCTTATGCTTGTTGTATTCTTCTACGACGATACTTGGTTCTTGTTGAACTTGTACACACAGAGTATAGGCTACTATCTGCAGTGGATTATACAGCTTGGTTTTCATACGGATGCCTTCGCCCAAATGGGAAATTCTCAGGACAAACACGATGTGGTCAGTTGGATGAAGGAATGGACCATCTTCTACTGGGGATGGTGGATTGCCTGGAGCCCATTCGTTGGAATGTTCATCGCCAAAATTTCCCGAGGTCGCACCATCAAACAGTTTATCAATGCCACCATGACTGCTCCCATTGTGTACACTTTCATGTGGCTGACGATCTTTGGTGGTGCTGGCATCAGGATGGAGCGTTTAGCTTTCCACGCTAACGTCACTTGTGATTCTGTTCTCGGAGGAAAGATGTCCACTGAAAGCTTCAACGGATTGTACCGTCTGTCCTGCCGCAATAAGGATGACATGTGGTTTGATGTTGTGCAGCAGTATGGGGACATTGGCTCAGTGCTATCCATTGTGTCCTTGGTTGGCATCATCCTGTACTTTGTGACCAGTTCTGATAGTGGGTCCCTAGTCATCGACTGCCTTTCAGCAAATGGTGATCCTGAACCCCCAATCCTCCAGCGTGTCTTCTGGGCGCTAACAGAGGGAGCTACCGCTACAGCCCTGCTGTTTGCTGGAGGTACCAAGGCTCTGACTGCTCTACAGACGGTTTCCATTGCAGCAGGAGTCCCTTACaccattttgctttgtttcatgtGCGTTGCATTATGGCGTGCCGTCCATGTCGAAGCTGGGGTCCTTGATCCTAATGGTCCAGGTTTCAGTGTCGATCTTTTTGAAGTAGTCACCACGCCTACCCTCGACTCTGTGAGAAGGGTTGCGTTTGCAGTGATCTGTCCATGGTATCCTATGGGAACGGCTGGCTGGAGGCTTGATGGCGCCAAAGGAAGTAGGCTGCCTTATATGCTGTCCCTTGCAATTCCATTCTACCTGTGGATTCTCGGTATGGCCTTGGAACCCGCTGTCGAGGGGTTGAGTTACCTGGCTTGGGCAATACTGTTCGCATTTTTCGCGTATGGCACTGGGATCCGTACCGGCATCCGCGACAAGTACGGCATCAATGGTAACATGGCGGAAGACTTCTTCGCTGTAATGTTACTTTACCCCTTGGCCGCCTACCAGATGGATCACTTCATGGATAGACCTCCATTCCCTCCTCTACACAGTGCCAACAATGTCGACGGATATGGAAACGGCATTAAAGGCTTGTCATATCAGAACAAGGGTGCTGATGACGTCCCGCTGGAAAAAGTAGACACTATGTTTTGA

Transcript

BRAKERYMET00000010404

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P9WPR6	Uncharacterized transporter MT0942 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=MT0942 PE=3 SV=1
P9WPR7	Uncharacterized transporter Rv0917 OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=Rv0917 PE=3 SV=1
P63696	Uncharacterized transporter Mb0941 OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) OX=233413 GN=BQ2027_MB0941 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000591 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02028 all species →	BCCT	BCCT, betaine/carnitine/choline family transporter	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000060 all species →	Family	BCCT transporter family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30047 all species →	HIGH-AFFINITY CHOLINE TRANSPORT PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0071705 all species →	Biological Process	nitrogen compound transport	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006810 all species →	Biological Process	transport	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02168	betT, betS; choline/glycine/proline betaine transport protein	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.