Gene detail

Detailed information of BRAKERYMEP00000011655.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: CAH3040196.1, unnamed protein product, partial [Pocillopora meandrina]
Species Astreopora myriophthalma · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000011655

ATGGACAATGTGAATACCGTGAGGCAAACTGCTCATGCCGTTGCTGTACTTGCCGCTATCCCTGATGAGTGTGACCAGGAGAGTATGCTGCGACTGAACAGGACATTGCATAACATGGTGGCATTGATCGTAGAGCAGTCTACTTTTACAGATTCTACAGTCCTCTGGGGCACATTGGAGGCTCTATCTGCAGCCCTGGGTAACACGCTAGGTGTCGTCTCACATTGGGTCCGTGCAGAGTTGGTTGGAAATAACACTTTAATGACTCGGCATAAAAACGATATCGAGACGGGAAAGGCTCTTACTGAAAGCATCGTTGACTATATCAGGCAGTTGTCACGCTCGTACATGCTAGGACACGTCCTTCCAAAAGAGGAACCTATTCAAGTGCGCTCCCCGTCACTCTCCTTTACCCTGAGCAGAGACTTTCCAGCGGGTTACAAGGCAACCATTGTCCACTGTGGAAATAGTGCAGTCAATTTACCAGAAAACTTTGGGCAGCTACCCATGATGATGGACGGGAATACAAGtgcattgtttgttgttgacaGTTTGGTTGTAGAAACACCTTTTGTGCCTTTTGTGTGGACAAACTCAGCCAGTGTAATCAACAGTGACGTGTTTTCGCTAGAAATTCGCAATTCCAGCACACAGGGAGAACTAGAAATTGTCAATCTCACAGAACCTGTGGACTTACGGATAAAGAAAGGGAGGGAGACTCTCCAATCGTCTGAAGGAAATGTGGAATACCCTAAGACACTGGAGCACAGTTTTGTTGTGGAGCACGATGGAAGCTCTATTAATATTGAAGTAGATGTGCAAGGGAAATTTGCTGAGCCGCCATCATTGGTTGTATATCTCAGAAAAGGAGAACGGCCGACCATGGATGGAGATGAGAAAGATAAAGTTCGAGTTGTTAAGCAAATTTCTGGCAGCATCAAGAACTCCACGAATTCGACCGTTGAGAGGAAGGAGACACAAGATGCTAAAGTGCTCTTCTTTAGCAACACGGAGTTCAATAAATCTGCTGCTGGGGAATATTTTGTTATCATTGAGTACAATGGAACAAGCACTGGAGTTGACGTGGCTAAGGAAGACAAGATGGTGAAATATCAGTTTTCTGTTTACACTTCAGATTGTGTGTACTGGAACACTGTTACTAACACTTGGATTGATGATGGCTGTCAGGTCGGTCCGTTGTCCAATTCTACTCACACTCAATGTCTGTGCACTCATCTGTCGTCATTTGCCAGCAGCTTCTTTGTTACACCAAATAAGATCGATTGGGGTAAAATTAATCTTGCTGAACTGCTACGTAATCCCACTGTTACTATTATCGTATGCTGCATCTTCCTGTTGTACTTTTTGTTGCTGATATGGGCGCGACGTAAGGACAATAAAGACTTGAAACTGGCTGGAGTGACCCCCCTGCCATCAAATGATCCCAGAGACCTTTATGGATACGAGATCATAGTTTTCACGGGCTTTGAGAGAGGTGCAGGTACTACTGCTGATGTCTCCATAGAGCTTACAGGCAAACTAGAGAAAACGCAGTCACGACGCCTGCAAGATCCTGATCCAGCACGGAAAAAATTCCAACGAGGAAATATTGATTTCTTCTTGTTGACCATTCCACGTCCTCTTGGAGAGATACAGCAACTAAGGTTGTGGCATAACAACGCGGGTTCCAGTCCTTCTTGGCTAGTCTCTAGAATCATAGTTCGTGACCTACAAACAGACAATACAGATTGTTTTGTCTGTGGCCGCTGGCTCGCGGTTGAAGAAGACGATGGTCAGATAGATCGAACGTTTGTCCCCGGCTCTAAAGAAGACTTGGTCAAGTTTAAATTTCTGTTTGGCTCTGAAGTACGGAAAAATCTCAGCGACGGGCATTTATGGTACTCAGTTATCCAACGTCCTGTCAGAAGCACATTTACACGCGTCCAGCGTCTATCCTGCTGCCTGTCGATTCTCACGTGTACCATGATAGCAAACGCCATGTTTTATAAGGACGATAAGGGAGGGGAATCGGACGGAGTGGAAGTCAAGATTGGACCAATTAGGCTGTCCGTCCAGCAGATTGGAATTGGGGTCATGTCAAGCTTAGTGGTCCTTCCTGTGAATCTGATTATTGTCAACATATTCAGGAAGGCCAGGCCCACGAACTCGCTTATTCCAGACTTGTCGCCGAGTGACCCTCGTGGAAAGGCTCAGCGTTATGCAGTTGTTCAAGAAgacaacgacgacgaccacTTTGTGGAGAAAAAAGAAGATAATGACATGAAAAAGGCCACAAAAGGGGAAAAGGAAGAATTCACTCTTCCTCATTACACAATCTACATAGCATACGTGCTGATCTTTTTGGCTTCGAGTACCTCAGCCGCATTTACCATTTTCTATTCACTGTCATTCGGTGAGGCGAAGTCGCAAAGATGGGTGTCAAGTATGATGATATCCTTCTGGCAAGACGTGATTATAACGCAGCCAATTAAGGTCATTCTTCTTGCCACCTTGTTTGCGCTGCTGATCAAAGACCCTAACAAAGCCATGGAGGATGATGGCAAACAAGCCACAAAGCTGGGTCAAGACGAAGAATGGGTGCATGATCCTTACGGGGAAAACCATGGAGCCTTGGACGTGAGAACAGGCAGTGATGTTCCGAAGCCGCCAGGGGAGGAAGAGCTACATTATTCGAGGCAACGATGTACGAAGCACAAGCAGATGAATGCCATTCTCAGGGAGATGTTCTTTTATTTCGTATTTATTGTTGTCATGTGTGTGGTGGCATATGGGAGTCGCGATTCTCAGGCGTTCGCAGTCAATGACGCAGTCAAGGGCATGTTTGTTGACAGTGACTACACTTTGCTATCGCCTTTTGAATGGagtaGCAAAGCATACGATCTTTGGGCGTGGATCGAAGAGACCTTCATTCCTTCGTTGAAACCGCAGTACTGGTACGGCCCGTTTATTGACAGCCACGAAAAAGAAATGTGGACAGAAGAGGCTATAGCACGGAGAACACTCCGAAGAGGAGGCACACGCAAGCTGTGGCCTAAAACGAAAGGTGGTGGTTCATATGCAGATGACCACGCCGAGTCATTTGAAAACATCAAGCGATTTCCCAAGGGAGTTACTGCCGACAGAGGGGTGTTTTATGTCGTTGGCGGTGCGAGATTACGTCAGTTGAGAGTAAAAAATGATAGCTGCCTCCTTCCCGCACACTTGAAAAACATTATACCAGATTGCAGCAACTACTATTCGTGGTCGGATGAGGAACAGGGAGCATTTAACCCAGGGTGGGTGCGTATGAAGGTCAGTGACGTCGAAATACTCTCAAATGAGCACCAGTCTCCTTGGATCTGGCAAAGCGCTTCAACTCTGAATGGCACTCTGTTCTGGGGAATATTCGCAAATTACTTGGGAGGGGGTTTCATCTACAATCTTGACTCTGAACGGCTAACAACTCAACAGAAAATACAGGACTTGCAAGCAGACGGATGGATCGACCGATACACTCGTGCCGTCTTTGCAGAGTTTACAGTGTACAACGCGCACACAAACTTCTTCAGCGTAGTGACTCTACTGACGGAAATATTGCCGACTGGCGGCTATCATCACTATCCCAAGGTTGAGACCCTCCGGCTGTACCGCTATACAGGGGCACAAACGGTAGTGATGGTATTCGAGTTTGTGTTTTTTGCCTTCCTGTGCCTTTTCTGTTACAGCGAGTGCAAGCAGCTGTTTATCGTGGGCAAGAAATATTTCTCAGACCCTTGGAATTACATCGAGTGCCTCGtcattttctcttctttctccGCCATTTTCCTGTACCTCATGGAGCTGGGAGTCACCAAACTTACCATCCGCCGCATGGTGGCAACTCGCGGTACTTTTATTAGCTTTGACTACATAGTCTTCATTGATGATGCGCACAAGGGGGTCTTAGGTTTCAGCGTTTTCTGTGCCTTCTTGAAGTTCCTTAAACTTCTCCGTTTCAATCGGCGTATGTCCATGCTGGTGCAGACCATCAAGGTTAGCTGCAGTCCACTCCTGTCGTTTTTCTTTATGTTCATGCTGTTCTTCGTTGCTTACACCCAAACAGCCTTCCTTGTATTTGGTCCAGTAAATGAAGACTACGCTACTTTCATTAAGGCAGCAGAGGCCATGATGTCAATGACTTTAGGAGGGTTTGATTTCATGGGAATGCAAAGCGCCAACAGACTTATTGGACCTATATTTTTTATCTCCTACATGGTGTTAGTATTTCTGATCCTTGTGAACGTGTTCTTGTCTATCGTGAATGACTCGTTCGCCGAAGTCACCAATGACGTCACCAATCAGAGCAATGAACACGAGATCGTCGATTACATTGTCTATCTTATCAAGGACTACATTGGGAGTTTGAATTCGTCACCATTCAAGCCACTTTACAAACCAGGCTTGACCGAATTTGAAAAAGCGCTTGCACATATCAAAGATCGTGTTGAGCAAATCGAATACGGTGTGGTCAATATCACTTTGGAGGAGCAACGCCAGGCCAACTGGTTCAAGGTTGAAAAGAGGAACGCAAAGAAAACAGCGCTGATTCAATATCTACTACATTCTGACGCAGAATTCAATGAAGATGACTTTTCTAATGCAATTCCACTCATGGTCAGGCTGCTGTCCAGACATTCATTGGATGACTTACAAGACACCCTCCTGAGACAACGAGAAAGTTTTATACTTTCTAAGTTCGATGTTCCATTCTTGTGTGCGGGAGACTACTCCAGCGGTTGCAATACTGACGACTTCGAGAGATTCAATGAAGAAGAGTACATAACGGACGCTGACGACGGCGGAGTTTCCTTGAACAGCTGGACTGCTTTCGAGCAACCCACGTACGGCTTAGTAGAAGAGATGCCGAATAACTTCCGGTCTTTGGATTCGATTGAAGAGGAGCGGGAGGCAAGCGAGGATGTCAACATCTATGAAGAAATTGACGAGCTCACAGCCCCATCGCTTCGTAACGATCGACAAGGTATTGATGCCCCCAGTGCTGACAGCTGCCGCCATGCAACTGCCAACAGCATTTAA

Transcript

BRAKERYMET00000011655

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7TN88	Polycystin-1-like protein 2 OS=Mus musculus OX=10090 GN=Pkd1l2 PE=2 SV=1
Q7Z442	Polycystin-1-like protein 2 OS=Homo sapiens OX=9606 GN=PKD1L2 PE=1 SV=5
Q2EG98	Polycystin-1-like protein 3 OS=Mus musculus OX=10090 GN=Pkd1l3 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000040 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01825 all species →	GPS	GPCR proteolysis site, GPS, motif	Motif	Interproscan
PF20519 all species →	Polycystin_dom	Polycystin domain	Domain	Interproscan
PF08016 all species →	PKD_channel	Polycystin cation channel	Family	Interproscan
PF01477 all species →	PLAT	PLAT/LH2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR046338 all species →	Homologous_superfamily	GAIN domain superfamily	Interproscan
IPR000203 all species →	Conserved_site	GPS motif	Interproscan
IPR000434 all species →	Family	Polycystic kidney disease type 1 protein	Interproscan
IPR051223 all species →	Family	Polycystin	Interproscan
IPR046791 all species →	Domain	Polycystin domain	Interproscan
IPR001024 all species →	Domain	PLAT/LH2 domain	Interproscan
IPR036392 all species →	Homologous_superfamily	PLAT/LH2 domain superfamily	Interproscan
IPR013122 all species →	Domain	Polycystin cation channel, PKD1/PKD2	Interproscan
IPR042060 all species →	Domain	Polycystin-1 like, PLAT/LH2 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10877 all species →	POLYCYSTIN FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005262 all species →	Molecular Function	calcium channel activity	Interproscan
GO:0050982 all species →	Biological Process	detection of mechanical stimulus	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04988	PKD1L2; polycystin 1L2	-	Ion channels	ko04040	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.