Gene detail

Detailed information of BRAKERYMEP00000012341.1 in Astreopora myriophthalma

Genomic Location: not available for this species
NR annotation: CAH3028897.1, unnamed protein product [Porites evermanni]
Species abbreviation AMYRI · all data for this species · gene families

Sequence

CDS

BRAKERYMET00000012341

ATGATCCCATTAGAAATCTACAGTACAGCACTGTTTTTCATGCCTTGTCTTTTAGGACTAGCAGATGCATTCATCCACAAAGATGGAACTAAGCACCAATTGGTTGGAAAACGAGGGCCGTCGTTCACACGACCTCAGCAGCAAGTGGCTACAGGAACACCAGAACCAAAAGGCGCTGGCAGTGACATGAAAAAGCCCCCATTTGGTGCTCAAAGCTCAGGGTCTGAAAGCAGTGTCGGTCCATTTACAGGGGATGGAGTAGAATCTGCTGTGTTTGAACCAGCAATCCAAGCAGCAGGCTTGCCTGAAGACATACAGCTAGATGTTGTGGTGACAGAGGTGATGTCTCCCGGGGTAATTTACTTAGGAAGTTTGGAGTCTTCACGAAACACTGCCAAGTTGACACAGGACATGAATGAGCACTACGGTGTTGTCTGTTACCCTCCGCTTGTTCCACATGAGAATGATTTGTGTGCCGCACTTTTTACCAAGACTGGAGACTGGTGTCGGGCATTTATCGAGGGAACCTCTCCAAATGGAACAGTGTATGTACACTATGTTGACTATGGCAACACTGAATTTGTACCTCAGCATCACCTGCGACCTCTCAATGAACAATTCAATTTCACTGCGTTGCCATTTTCTGCTCTCCGGTGTTCCATAGCAAATGTCGTTCCACTTGATTCGTCTGGCTGGTCTGAAGAAGCTAAGGGATTTCTGAAGACACTTATTCCAGAATATAGTCGTTGTAATGCACGTGTGGTTGGACGACGAAAAGGAAGGCTTGTCGTGGACATAACCATTAATGAAACTGGCCAAAGTGTTAGTCAAACGCTGGTGAAACAAGGGCTTGCAAGGGTAAAAAGAGGAGAGCATGATGCCCAACAGAACTCACGACAGGGAATTGTGAATGATAATGTGGTCAAAGAATCCAGGAGTCAAACTTCAAACAGCCATGTTACCGCAACCCCACCAAAAGGGAAGAGTGAGAAGCCAGATAATAGTCCGTTGGAGTCCGTTGTCTTTCAGCCTGCAATTCAGTCAGCAACATTGCCACAGGACGAATCGTACTTTTACGTCATGTTGACAGAGGTGACAAAaactggtttgttttttgttcaagtAGCAGACCATGAAACTGCCCAGAAGTTGAAGAACCTTTCAGACGATATGAATGCAACCTATGGCTCATCCGGGCAATCTTTCTTCCACCCTCACACAAATCAATTATGTGCAGCTCTCTTTGCAGAAACCGGTGACTGGTGCCGTGCCATAATCAAAGACGTTACTCCTGATGGTTTAGTGGATGTTCATTATGTTGACTTTGGAAACACTGAAAAACTACCTGTTTCGAGTATCAAGCCACTTGCGGATAAATTCGCCAATGCTCCATTCTTTGCACTGCCGTGCTACTTGGCTAATATTTCACAACCAGAGCCCCATGGCTGGTCAGAGCAAGCAATGGCACTGATTAAGAAAAAAGTTCCATTATTTCAACGTGCAAGCGCTCAAGTGTTGGGGAAACGTCATGGTATGCTATTAATtgattttgcaatttcaaccaATCCACCCCAGTCTCTGAGCCAACTGCTTTTGAATGAAGGCCTCGCACAAAGGTCAGTGAGGGGTGACACTCATCTCGAGCAGCAAGGGGGACCTTTACTACTACGAGAGCCATTGTACCCCTTAAGTCAACAATCTGCAAGCAGTACATCATCCTCAAGAAAAGCAGGATCTATTGAATCGTGTGTCTTTGAACCTGCTCTCAAGTCAGTTATGGGTTTTGATGCCTTTGACGCCATGTTGACAGATGTCTCGTCGCCAAGCTCACTTTTTATCCAAGTTCTGCAGCATGACAAGGTTGAGGCACTGCAACAGCTCTCAGCAGATCTGAATGCGCATTACAGTACTGTTAATTATCCTCCTTTTGGACCCCAAACCAATGAGATGTGTGCAGGATTATTCTCTGATACTGACGACTGGTGTAGAGGTTTTATTGATGGTGTTAACTCAGATGGTTCTGTGCATGTTCATTATTTGGATTATGGCAACAGTGAGGTGTTGCCTTGTTCAAGAGTGCGCCCTCTGGAAGAACGATTCCAGAAGCAATCGCCAATGGCTTTGAAATGCTCATTGTCTGGAGTCTTACCTGCTCAGTCAAATGGCTGGTCTGACAATGCCAAGGAAGCAATATTGTCTCAAGCACCATTAAATAGCCATTTGAAAGTCAAAGTTGTTGGAAGGGAAAGCTGCTTGCTTTTCATCGATGCCTTTTCTCCTGATTTTCCCAGTCAAGAGTCACTAAGCCAGTTCCTCATCACGCAAGGACTGGCCTCTGCTAATCTGGCAGTTGAGCGACCTGTGCAGTCATCTCCAGCTACTTCTGCTTCTGACAACCATTTTTATGCCTCAGCAATTCCCTTGGTAGATGTTCCGACAGCCATCAGATGTCGAGTCCTAATCAGCGAAGTTCAACGACCAGACAAGATATTTGTACAAGTCCTCACTAAAGAAAATGTTCAAGGTCTTTTGGCGATGTCAGAAACTTTAAACACCCGTTGCTGTACAGTTGACACCGTCCCTTACAAACCAGCATTGGGAGAGCTATGCTGTGCTAAATTCAGTGATGACCAAACCTGGTACCGTGCAGTGGTTGAACAGGAAATTTCTGAGTCCCAGATGATGGTAGTGTTCGTTGATTATGGGAACCAAGCTGAAGTTGCTGTGGAGTCCATCAGACAAATCACGCATCCATTCACTCAGCTTCCTATTCAAGCCAGAGAGTGTTTCTTGGAGAACATTGAACCACTGTCAGGCTGCATTTGGTCGAACGATGCTGTTACATTCTTGAAGGAGCGTTTAATGCCTCAGATAACTGAACCTTTCTTTGCAGAGTTTGATTGTACAGCTGGAAGTGGACGTTGTCTTGGTGTTCAGTTGTTTGAAGTGAGTCCTAATGGGCTGCCAGGGAGGTCTGTTTCTCAAGATATGATTCAGCGTGGTCTTGCTCGAGGTCAAGATGATGCTAGTAGTTCTGTGCTTCAGATGATGGTGCCAAACCTTGATCACTTTGATGTTGTCATAACCGAGGTTGTACATCCAGGAGAGATATGGGGTCAAGTCCTGGATGCAAAGGCTCAAAGTGCACTTGATATGCTCATGAAAGATATCAACCAGTATTGTGTGGAAGCACCTATTCCGACCTCCTCTTTCCAACCTGGGCAGGAATGTTGTGCCCAGTTTAGCCAAGATTGCCTTTGGTATAGAGCACGTGTGCTAGAATGCCCTACATCTAAGCAGATTACAGTTCAATTTGTGGACTTCGGTAACAGTGAATTGCTATCACCTGACAAGATAAGAGTCATGAAAGATGAGTTCTTCAAACTCCCTGCACAGGCACTCAAGCTCAGCTTAGCAAATATCTGCCCTACTCATCAGGTTTGGAGCCAGGATGCAGTGCATTGGCTGAAGGTGATACTCAACCGACAGCTCAAGGCTACAGTTGTCCACCGCCAGTTGGAGCATTTGGTTGTGTTGCTCGAGGACTGGAATGTGCCCAATGGTCCCATTAATATAAGCCAGGAGTTAGTGAGTATAGGATATGCTGTTAAGTCCTAA

Transcript

BRAKERYMET00000012341

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q58EK5	Tudor domain-containing protein 1 OS=Danio rerio OX=7955 GN=tdrd1 PE=1 SV=2
Q9BXT4	Tudor domain-containing protein 1 OS=Homo sapiens OX=9606 GN=TDRD1 PE=1 SV=2
Q99MV1	Tudor domain-containing protein 1 OS=Mus musculus OX=10090 GN=Tdrd1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003584 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00565 all species →	SNase	Staphylococcal nuclease homologue	Domain	Interproscan
PF00567 all species →	TUDOR	Tudor domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002999 all species →	Domain	Tudor domain	Interproscan
IPR016071 all species →	Domain	Staphylococcal nuclease (SNase-like), OB-fold	Interproscan
IPR035437 all species →	Homologous_superfamily	SNase-like, OB-fold superfamily	Interproscan
IPR050621 all species →	Family	Tudor domain-containing	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22948 all species →	TUDOR DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007283 all species →	Biological Process	spermatogenesis	Interproscan
GO:0030719 all species →	Biological Process	P granule organization	Interproscan
GO:0034587 all species →	Biological Process	piRNA processing	Interproscan
GO:0043186 all species →	Cellular Component	P granule	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18405	TDRD1_4_6_7; tudor domain-containing protein 1/4/6/7	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.